RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 RPP30P78346 268 aaKnown RBP13.89□□□□□ -0.19
CLN3-259ENST00000637551 Q56UQ5 140 aa13.89□□□□□ -0.19
CLN3-259ENST00000637551 SPINK9Q5DT21 86 aa13.89□□□□□ -0.19
CLN3-259ENST00000637551 GGNBP1Q5YKI7 109 aa13.89□□□□□ -0.19
CLN3-259ENST00000637551 TMEM116Q8NCL8 245 aa13.89□□□□□ -0.19
CLN3-259ENST00000637551 MRAPQ8TCY5 172 aa13.89□□□□□ -0.19
CLN3-259ENST00000637551 ZC4H2Q9NQZ6 224 aa13.89□□□□□ -0.19
CLN3-259ENST00000637551 MRPL27Q9P0M9 148 aaKnown RBP13.89□□□□□ -0.19
CLN3-259ENST00000637551 TMEM213A2RRL7 107 aa13.88□□□□□ -0.19
CLN3-259ENST00000637551 K7EIL1 84 aa13.88□□□□□ -0.19
CLN3-259ENST00000637551 GNG7O60262 68 aa13.88□□□□□ -0.19
CLN3-259ENST00000637551 IGHV3-23P01764 117 aa13.88□□□□□ -0.19
CLN3-259ENST00000637551 OPRK1P41145 380 aa13.88□□□□□ -0.19
CLN3-259ENST00000637551 CACNG8Q8WXS5 425 aa13.88□□□□□ -0.19
CLN3-259ENST00000637551 OR10C1Q96KK4 312 aa13.88□□□□□ -0.19
CLN3-259ENST00000637551 TRAV25A0A0B4J276 109 aa13.87□□□□□ -0.19
CLN3-259ENST00000637551 CLN5O75503 358 aa13.87□□□□□ -0.19
CLN3-259ENST00000637551 IL5P05113 134 aa13.87□□□□□ -0.19
CLN3-259ENST00000637551 H2AFB2P0C5Z0 115 aa13.87□□□□□ -0.19
CLN3-259ENST00000637551 FOLR2P14207 255 aa13.87□□□□□ -0.19
CLN3-259ENST00000637551 CBLN1P23435 193 aa13.87□□□□□ -0.19
CLN3-259ENST00000637551 ID3Q02535 119 aa13.87□□□□□ -0.19
CLN3-259ENST00000637551 ENKURQ8TC29 256 aa13.87□□□□□ -0.19
CLN3-259ENST00000637551 ZNF431Q8TF32 576 aaPredicted RBP13.87□□□□□ -0.19
CLN3-259ENST00000637551 PINX1Q96BK5 328 aaKnown RBP13.87□□□□□ -0.19
CLN3-259ENST00000637551 RBKSQ9H477 322 aa13.87□□□□□ -0.19
CLN3-259ENST00000637551 S4R3C0 116 aa13.87□□□□□ -0.19
CLN3-259ENST00000637551 SYNGR2O43760 224 aa13.86□□□□□ -0.19
CLN3-259ENST00000637551 PRAF2O60831 178 aa13.86□□□□□ -0.19
CLN3-259ENST00000637551 IFNA10P01566 189 aa13.86□□□□□ -0.19
CLN3-259ENST00000637551 CD5P06127 495 aa13.86□□□□□ -0.19
CLN3-259ENST00000637551 HOXB5P09067 269 aa13.86□□□□□ -0.19
CLN3-259ENST00000637551 GP9P14770 177 aa13.86□□□□□ -0.19
CLN3-259ENST00000637551 BMI1P35226 326 aa13.86□□□□□ -0.19
CLN3-259ENST00000637551 UBAC2Q8NBM4 344 aa13.86□□□□□ -0.19
CLN3-259ENST00000637551 GINS3Q9BRX5 216 aa13.86□□□□□ -0.19
CLN3-259ENST00000637551 CHRDL1Q9BU40 450 aa13.86□□□□□ -0.19
CLN3-259ENST00000637551 FNDC4Q9H6D8 234 aaPredicted RBP13.86□□□□□ -0.19
CLN3-259ENST00000637551 LSM4Q9Y4Z0 139 aaKnown RBP13.86□□□□□ -0.19
CLN3-259ENST00000637551 WI2-2373I1.2A0A1W2PRP0 233 aa13.85□□□□□ -0.19
CLN3-259ENST00000637551 ZNF320A2RRD8 509 aa13.85□□□□□ -0.19
CLN3-259ENST00000637551 SPNP16150 400 aa13.85□□□□□ -0.19
CLN3-259ENST00000637551 GPX4P36969 197 aaPredicted RBP13.85□□□□□ -0.19
CLN3-259ENST00000637551 RAB11AP62491 216 aa13.85□□□□□ -0.19
CLN3-259ENST00000637551 ZNF600Q6ZNG1 722 aa13.85□□□□□ -0.19
CLN3-259ENST00000637551 OR4D5Q8NGN0 318 aa13.85□□□□□ -0.19
CLN3-259ENST00000637551 DYNLRB2Q8TF09 96 aa13.85□□□□□ -0.19
CLN3-259ENST00000637551 TRAV6A0A075B6T7 132 aa13.84□□□□□ -0.19
CLN3-259ENST00000637551 A8MZ25 164 aa13.84□□□□□ -0.19
CLN3-259ENST00000637551 TMEM50AO95807 157 aa13.84□□□□□ -0.19
CLN3-259ENST00000637551 NKX2-1P43699 371 aaPredicted RBP13.84□□□□□ -0.19
CLN3-259ENST00000637551 TAS2R30P59541 319 aa13.84□□□□□ -0.19
CLN3-259ENST00000637551 CD69Q07108 199 aa13.84□□□□□ -0.19
CLN3-259ENST00000637551 DEFB114Q30KQ6 69 aa13.84□□□□□ -0.19
CLN3-259ENST00000637551 UNQ9165/PRO28630Q6UXU0 137 aa13.84□□□□□ -0.19
CLN3-259ENST00000637551 ADAMTSL5Q6ZMM2 481 aa13.84□□□□□ -0.19
CLN3-259ENST00000637551 OR1S2Q8NGQ3 325 aa13.84□□□□□ -0.19
CLN3-259ENST00000637551 TMEM170AQ8WVE7 144 aa13.84□□□□□ -0.19
CLN3-259ENST00000637551 GPN1Q9HCN4 374 aaPredicted RBP13.84□□□□□ -0.19
CLN3-259ENST00000637551 SNRPGP15A8MWD9 76 aa13.83□□□□□ -0.2
CLN3-259ENST00000637551 ADAP1O75689 374 aa13.83□□□□□ -0.2
CLN3-259ENST00000637551 YPEL3P61236 119 aaPredicted RBP13.83□□□□□ -0.2
CLN3-259ENST00000637551 IFITM3Q01628 133 aa13.83□□□□□ -0.2
CLN3-259ENST00000637551 PRSS54Q6PEW0 395 aa13.83□□□□□ -0.2
CLN3-259ENST00000637551 SMAD5-AS1Q9Y6J3 95 aa13.83□□□□□ -0.2
CLN3-259ENST00000637551 IGHV3-21A0A0B4J1V1 117 aa13.82□□□□□ -0.2
CLN3-259ENST00000637551 SCAF4O95104 1147 aaKnown RBP13.82□□□□□ -0.2
CLN3-259ENST00000637551 PRB2P02812 416 aaPredicted RBP13.82□□□□□ -0.2
CLN3-259ENST00000637551 C12orf45Q8N5I9 185 aaPredicted RBP13.82□□□□□ -0.2
CLN3-259ENST00000637551 UXS1Q8NBZ7 420 aa13.82□□□□□ -0.2
CLN3-259ENST00000637551 RAB40CQ96S21 281 aa13.82□□□□□ -0.2
CLN3-259ENST00000637551 B9D2Q9BPU9 175 aa13.82□□□□□ -0.2
CLN3-259ENST00000637551 MARVELD1Q9BSK0 173 aa13.82□□□□□ -0.2
CLN3-259ENST00000637551 WRBO00258 174 aa13.81□□□□□ -0.2
CLN3-259ENST00000637551 IFNA4P05014 189 aa13.81□□□□□ -0.2
CLN3-259ENST00000637551 IAH1Q2TAA2 248 aaPredicted RBP13.81□□□□□ -0.2
CLN3-259ENST00000637551 CD300EQ496F6 205 aaPredicted RBP13.81□□□□□ -0.2
CLN3-259ENST00000637551 SLC16A13Q7RTY0 426 aa13.81□□□□□ -0.2
CLN3-259ENST00000637551 GTSCR1Q86UQ5 136 aa13.81□□□□□ -0.2
CLN3-259ENST00000637551 ZNF414Q96IQ9 312 aa13.81□□□□□ -0.2
CLN3-259ENST00000637551 PRR25Q96S07 402 aa13.81□□□□□ -0.2
CLN3-259ENST00000637551 IGKV1-17P01599 117 aa13.8□□□□□ -0.2
CLN3-259ENST00000637551 FABP1P07148 127 aa13.8□□□□□ -0.2
CLN3-259ENST00000637551 IGLC1P0CG04 106 aa13.8□□□□□ -0.2
CLN3-259ENST00000637551 TM4SF20Q53R12 229 aa13.8□□□□□ -0.2
CLN3-259ENST00000637551 LAMTOR1Q6IAA8 161 aa13.8□□□□□ -0.2
CLN3-259ENST00000637551 NRARPQ7Z6K4 114 aa13.8□□□□□ -0.2
CLN3-259ENST00000637551 ZBTB8BQ8NAP8 495 aaPredicted RBP13.8□□□□□ -0.2
CLN3-259ENST00000637551 OR52B4Q8NGK2 314 aa13.8□□□□□ -0.2
CLN3-259ENST00000637551 SMIM8Q96KF7 97 aa13.8□□□□□ -0.2
CLN3-259ENST00000637551 SPAG8Q99932 426 aaPredicted RBP13.8□□□□□ -0.2
CLN3-259ENST00000637551 FAM110AQ9BQ89 295 aa13.8□□□□□ -0.2
CLN3-259ENST00000637551 FNDC10F2Z333 226 aa13.79□□□□□ -0.2
CLN3-259ENST00000637551 TSC22D2O75157 780 aa13.79□□□□□ -0.2
CLN3-259ENST00000637551 NXPH3O95157 252 aa13.79□□□□□ -0.2
CLN3-259ENST00000637551 RND2P52198 227 aa13.79□□□□□ -0.2
CLN3-259ENST00000637551 TMEM231Q9H6L2 316 aa13.79□□□□□ -0.2
CLN3-259ENST00000637551 ZFAND3Q9H8U3 227 aa13.79□□□□□ -0.2
CLN3-259ENST00000637551 MLXQ9UH92 298 aa13.79□□□□□ -0.2
CLN3-259ENST00000637551 SMPXQ9UHP9 88 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms