RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 OR10C1Q96KK4 312 aa13.84□□□□□ -0.19
CLN3-239ENST00000628023 OR4C12Q96R67 309 aa13.84□□□□□ -0.19
CLN3-239ENST00000628023 ATP6V0BQ99437 205 aa13.84□□□□□ -0.19
CLN3-239ENST00000628023 SNRPGP15A8MWD9 76 aa13.83□□□□□ -0.2
CLN3-239ENST00000628023 SSSCA1O60232 199 aa13.83□□□□□ -0.2
CLN3-239ENST00000628023 GNG7O60262 68 aa13.83□□□□□ -0.2
CLN3-239ENST00000628023 IFNA4P05014 189 aa13.83□□□□□ -0.2
CLN3-239ENST00000628023 NPBWR1P48145 328 aa13.83□□□□□ -0.2
CLN3-239ENST00000628023 DCTN2Q13561 401 aaKnown RBP13.83□□□□□ -0.2
CLN3-239ENST00000628023 FAM106AQ4KMX7 169 aa13.83□□□□□ -0.2
CLN3-239ENST00000628023 PVRIGQ6DKI7 326 aa13.83□□□□□ -0.2
CLN3-239ENST00000628023 GSG1LQ6UXU4 331 aa13.83□□□□□ -0.2
CLN3-239ENST00000628023 OR4D5Q8NGN0 318 aa13.83□□□□□ -0.2
CLN3-239ENST00000628023 RNASEH2CQ8TDP1 164 aaKnown RBP13.83□□□□□ -0.2
CLN3-239ENST00000628023 PEMTQ9UBM1 199 aa13.83□□□□□ -0.2
CLN3-239ENST00000628023 IGHV3-35A0A0C4DH35 117 aa13.82□□□□□ -0.2
CLN3-239ENST00000628023 ZNF320A2RRD8 509 aa13.82□□□□□ -0.2
CLN3-239ENST00000628023 NUPL2O15504 423 aaKnown RBP13.82□□□□□ -0.2
CLN3-239ENST00000628023 SCGB2A1O75556 95 aa13.82□□□□□ -0.2
CLN3-239ENST00000628023 LY86O95711 162 aa13.82□□□□□ -0.2
CLN3-239ENST00000628023 INSL3P51460 131 aa13.82□□□□□ -0.2
CLN3-239ENST00000628023 ATP5IP56385 69 aaPredicted RBP13.82□□□□□ -0.2
CLN3-239ENST00000628023 POLR2GP62487 172 aaKnown RBP eCLIP13.82□□□□□ -0.2
CLN3-239ENST00000628023 RAB11AP62491 216 aa13.82□□□□□ -0.2
CLN3-239ENST00000628023 TXN2Q99757 166 aa13.82□□□□□ -0.2
CLN3-239ENST00000628023 F8W735 103 aaPredicted RBP13.81□□□□□ -0.2
CLN3-239ENST00000628023 K7EIL1 84 aa13.81□□□□□ -0.2
CLN3-239ENST00000628023 ID3Q02535 119 aa13.81□□□□□ -0.2
CLN3-239ENST00000628023 ETFRF1Q6IPR1 90 aa13.81□□□□□ -0.2
CLN3-239ENST00000628023 GPHB5Q86YW7 130 aa13.81□□□□□ -0.2
CLN3-239ENST00000628023 FNDC4Q9H6D8 234 aaPredicted RBP13.81□□□□□ -0.2
CLN3-239ENST00000628023 ZMAT5Q9UDW3 170 aaKnown RBP13.81□□□□□ -0.2
CLN3-239ENST00000628023 H3BP45 60 aa13.8□□□□□ -0.2
CLN3-239ENST00000628023 GOSR2O14653 212 aa13.8□□□□□ -0.2
CLN3-239ENST00000628023 SSNA1O43805 119 aa13.8□□□□□ -0.2
CLN3-239ENST00000628023 FCGR2BP31994 310 aaPredicted RBP13.8□□□□□ -0.2
CLN3-239ENST00000628023 RELQ04864 619 aaPredicted RBP13.8□□□□□ -0.2
CLN3-239ENST00000628023 RGS21Q2M5E4 152 aa13.8□□□□□ -0.2
CLN3-239ENST00000628023 SPANXN5Q5MJ07 72 aa13.8□□□□□ -0.2
CLN3-239ENST00000628023 TMEM170AQ8WVE7 144 aa13.8□□□□□ -0.2
CLN3-239ENST00000628023 C2orf50Q96LR7 162 aa13.8□□□□□ -0.2
CLN3-239ENST00000628023 CHRDL1Q9BU40 450 aa13.8□□□□□ -0.2
CLN3-239ENST00000628023 C15orf62A8K5M9 175 aa13.79□□□□□ -0.2
CLN3-239ENST00000628023 LGALS9O00182 355 aa13.79□□□□□ -0.2
CLN3-239ENST00000628023 SLC25A4P12235 298 aa13.79□□□□□ -0.2
CLN3-239ENST00000628023 MLANAQ16655 118 aa13.79□□□□□ -0.2
CLN3-239ENST00000628023 SLC16A13Q7RTY0 426 aa13.79□□□□□ -0.2
CLN3-239ENST00000628023 OR4X1Q8NH49 305 aa13.79□□□□□ -0.2
CLN3-239ENST00000628023 PSENENQ9NZ42 101 aa13.79□□□□□ -0.2
CLN3-239ENST00000628023 STRAPQ9Y3F4 350 aaKnown RBP13.79□□□□□ -0.2
CLN3-239ENST00000628023 LSM5Q9Y4Y9 91 aaKnown RBP13.79□□□□□ -0.2
CLN3-239ENST00000628023 CTSGP08311 255 aa13.78□□□□□ -0.2
CLN3-239ENST00000628023 ADMP35318 185 aa13.78□□□□□ -0.2
CLN3-239ENST00000628023 RND2P52198 227 aa13.78□□□□□ -0.2
CLN3-239ENST00000628023 S100A10P60903 97 aa13.78□□□□□ -0.2
CLN3-239ENST00000628023 EGFEM1PQ0D2K5 195 aa13.78□□□□□ -0.2
CLN3-239ENST00000628023 DYNLRB2Q8TF09 96 aa13.78□□□□□ -0.2
CLN3-239ENST00000628023 RAB40CQ96S21 281 aa13.78□□□□□ -0.2
CLN3-239ENST00000628023 C20orf24Q9BUV8 137 aa13.78□□□□□ -0.2
CLN3-239ENST00000628023 ZNF436Q9C0F3 470 aaPredicted RBP13.78□□□□□ -0.2
CLN3-239ENST00000628023 WI2-2373I1.2A0A1W2PRP0 233 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 L7N2F9 121 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 NDUFA4O00483 81 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 CLN5O75503 358 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 YIF1AO95070 293 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 MBPP02686 304 aaPredicted RBP13.77□□□□□ -0.21
CLN3-239ENST00000628023 CSN3P07498 182 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 KRTAP10-11P60412 298 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 VAMP2P63027 116 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 CD69Q07108 199 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 UNQ9165/PRO28630Q6UXU0 137 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 HAPLN4Q86UW8 402 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 TMEM190Q8WZ59 177 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 ACY3Q96HD9 319 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 SLC35E1Q96K37 410 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 MRPL36Q9P0J6 103 aaKnown RBP13.77□□□□□ -0.21
CLN3-239ENST00000628023 RCL1Q9Y2P8 373 aaKnown RBP13.77□□□□□ -0.21
CLN3-239ENST00000628023 UFC1Q9Y3C8 167 aa13.77□□□□□ -0.21
CLN3-239ENST00000628023 C2orf70A6NJV1 201 aa13.76□□□□□ -0.21
CLN3-239ENST00000628023 A8MWP6 167 aa13.76□□□□□ -0.21
CLN3-239ENST00000628023 PRSS54Q6PEW0 395 aa13.76□□□□□ -0.21
CLN3-239ENST00000628023 SMIM8Q96KF7 97 aa13.76□□□□□ -0.21
CLN3-239ENST00000628023 ALG5Q9Y673 324 aa13.76□□□□□ -0.21
CLN3-239ENST00000628023 TRAV30A0A087WSZ9 112 aa13.75□□□□□ -0.21
CLN3-239ENST00000628023 K7EPK0 472 aa13.75□□□□□ -0.21
CLN3-239ENST00000628023 SIX6O95475 246 aa13.75□□□□□ -0.21
CLN3-239ENST00000628023 TMEM50AO95807 157 aa13.75□□□□□ -0.21
CLN3-239ENST00000628023 PVALBP20472 110 aaPredicted RBP13.75□□□□□ -0.21
CLN3-239ENST00000628023 TM4SF20Q53R12 229 aa13.75□□□□□ -0.21
CLN3-239ENST00000628023 IL34Q6ZMJ4 242 aa13.75□□□□□ -0.21
CLN3-239ENST00000628023 MGAT4CQ9UBM8 478 aa13.75□□□□□ -0.21
CLN3-239ENST00000628023 DNAH3Q8TD57 4116 aa13.74□□□□□ -0.21
CLN3-239ENST00000628023 IGHV3OR16-8A0A075B7F1 116 aa13.74□□□□□ -0.21
CLN3-239ENST00000628023 TMEM213A2RRL7 107 aa13.74□□□□□ -0.21
CLN3-239ENST00000628023 C7orf66A4D0T2 115 aa13.74□□□□□ -0.21
CLN3-239ENST00000628023 FOLR2P14207 255 aa13.74□□□□□ -0.21
CLN3-239ENST00000628023 OR10J1P30954 320 aa13.74□□□□□ -0.21
CLN3-239ENST00000628023 GPX4P36969 197 aaPredicted RBP13.74□□□□□ -0.21
CLN3-239ENST00000628023 TIGITQ495A1 244 aa13.74□□□□□ -0.21
CLN3-239ENST00000628023 ZNF600Q6ZNG1 722 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms