RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ZNF355PQ9NSJ1 428 aa8.88□□□□□ -0.99
UPF3A-212ENST00000619079 HSPB8Q9UJY1 196 aa8.88□□□□□ -0.99
UPF3A-212ENST00000619079 TCF19Q9Y242 345 aa8.88□□□□□ -0.99
UPF3A-212ENST00000619079 SOX21Q9Y651 276 aaPredicted RBP8.88□□□□□ -0.99
UPF3A-212ENST00000619079 IGHV1-24A0A0C4DH33 117 aa8.87□□□□□ -0.99
UPF3A-212ENST00000619079 C3orf80F5H4A9 247 aa8.87□□□□□ -0.99
UPF3A-212ENST00000619079 ADH4P08319 380 aa8.87□□□□□ -0.99
UPF3A-212ENST00000619079 SMIM17P0DL12 118 aa8.87□□□□□ -0.99
UPF3A-212ENST00000619079 KIR2DS2P43631 304 aa8.87□□□□□ -0.99
UPF3A-212ENST00000619079 GPR12P47775 334 aa8.87□□□□□ -0.99
UPF3A-212ENST00000619079 GDF5OSQ5U4N7 250 aa8.87□□□□□ -0.99
UPF3A-212ENST00000619079 TRAT1Q6PIZ9 186 aa8.87□□□□□ -0.99
UPF3A-212ENST00000619079 FAM214BQ7L5A3 538 aa8.87□□□□□ -0.99
UPF3A-212ENST00000619079 BPIFA4PQ86YQ2 179 aa8.87□□□□□ -0.99
UPF3A-212ENST00000619079 PSG11Q9UQ72 335 aa8.87□□□□□ -0.99
UPF3A-212ENST00000619079 MGAQ8IWI9 3026 aa8.87□□□□□ -0.99
UPF3A-212ENST00000619079 TMEM238LA0A1B0GVL6 79 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 A0A1B0GXF2 115 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 SMPD2O60906 423 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 COX8AP10176 69 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 HTR1DP28221 377 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 CEACAM3P40198 252 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 FOXF2Q12947 444 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 WIPI1Q5MNZ9 446 aaPredicted RBP8.86□□□□□ -0.99
UPF3A-212ENST00000619079 C9orf135Q5VTT2 229 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 SSBP3Q9BWW4 388 aaPredicted RBP8.86□□□□□ -0.99
UPF3A-212ENST00000619079 DIDO1Q9BTC0 2240 aaKnown RBP8.86□□□□□ -0.99
UPF3A-212ENST00000619079 A0A087X0K7 114 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 H3BRM9 83 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 J3QW42 95 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 K7EP34 96 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 SPINT2O43291 252 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 PSPNO60542 156 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 SP1P08047 785 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 IGFBP2P18065 325 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 CCL11P51671 97 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 HBBP68871 147 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 OR5A1Q8NGJ0 315 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 H1FXQ92522 213 aaKnown RBP8.86□□□□□ -0.99
UPF3A-212ENST00000619079 FAM168AQ92567 244 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 SNRNP40Q96DI7 357 aaKnown RBP8.86□□□□□ -0.99
UPF3A-212ENST00000619079 URB1-AS1Q96HZ7 61 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 MRPL32Q9BYC8 188 aaKnown RBP8.86□□□□□ -0.99
UPF3A-212ENST00000619079 TP73-AS1Q9UF72 201 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 SSUH2Q9Y2M2 353 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 ZNF835Q9Y2P0 537 aa8.86□□□□□ -0.99
UPF3A-212ENST00000619079 C9orf118A6NHY6 69 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 HIGD1CA8MV81 97 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 C8orf88P0DMB2 117 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 GPR6P46095 362 aaPredicted RBP8.85□□□□□ -0.99
UPF3A-212ENST00000619079 CAMPP49913 170 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 GABRA6Q16445 453 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 TMEM97Q5BJF2 176 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 SAMD13Q5VXD3 122 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 WDR86Q86TI4 376 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 TMEM251Q8N6I4 163 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 C5orf17Q8NAS9 161 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 ZNF503Q96F45 646 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 TMEM140Q9NV12 185 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 IDI2-AS1Q9NZ38 188 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 FAM231BA6NCW3 169 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 ZNF503-AS2A6NEH8 195 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 C15orf61A6NNL5 157 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 AESQ08117 197 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 NEGR1Q7Z3B1 354 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 TMEM186Q96B77 213 aa8.85□□□□□ -0.99
UPF3A-212ENST00000619079 SSBP4Q9BWG4 385 aaPredicted RBP8.85□□□□□ -0.99
UPF3A-212ENST00000619079 DSPP15924 2871 aaKnown RBP8.85□□□□□ -0.99
UPF3A-212ENST00000619079 ZNHIT1O43257 154 aa8.84□□□□□ -0.99
UPF3A-212ENST00000619079 DPF1Q92782 380 aa8.84□□□□□ -0.99
UPF3A-212ENST00000619079 S1PR3Q99500 378 aa8.84□□□□□ -0.99
UPF3A-212ENST00000619079 AMMECR1Q9Y4X0 333 aaPredicted RBP8.84□□□□□ -0.99
UPF3A-212ENST00000619079 MAP1BP46821 2468 aaKnown RBP8.84□□□□□ -0.99
UPF3A-212ENST00000619079 APOA2P02652 100 aa8.84□□□□□ -0.99
UPF3A-212ENST00000619079 ATP5IP56385 69 aaPredicted RBP8.84□□□□□ -0.99
UPF3A-212ENST00000619079 ZNF841Q6ZN19 808 aa8.84□□□□□ -0.99
UPF3A-212ENST00000619079 SSX8Q7RTT4 187 aa8.84□□□□□ -0.99
UPF3A-212ENST00000619079 PRR7Q8TB68 274 aa8.84□□□□□ -0.99
UPF3A-212ENST00000619079 FOXA2Q9Y261 457 aaPredicted RBP8.84□□□□□ -0.99
UPF3A-212ENST00000619079 PTPRQQ9UMZ3 2332 aa8.84□□□□□ -0.99
UPF3A-212ENST00000619079 PPIAL4DF5H284 164 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 LINC00205P59089 165 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 HSPE1P61604 102 aaKnown RBP8.83□□□□□ -1
UPF3A-212ENST00000619079 UBE2L3P68036 154 aaKnown RBP8.83□□□□□ -1
UPF3A-212ENST00000619079 ZNF766Q5HY98 468 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 LINC01545Q5VT33 79 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 FAM53AQ6NSI3 398 aaPredicted RBP8.83□□□□□ -1
UPF3A-212ENST00000619079 OR2K2Q8NGT1 345 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 NANOS1Q8WY41 292 aaKnown RBP8.83□□□□□ -1
UPF3A-212ENST00000619079 COQ2Q96H96 371 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 SLC25A33Q9BSK2 321 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 A0A0G2JMM0 328 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 A0A1W2PPB8 328 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 KIR3DP1A8MWS1 328 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 GDF1P27539 372 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 LGALS7P47929 136 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 Q0VFX4 171 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 PSG3Q16557 428 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 CT83Q5H943 113 aa8.83□□□□□ -1
UPF3A-212ENST00000619079 C2orf91Q6ZV80 131 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms