RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 IGHV4OR15-8A0A075B7B6 117 aa15.18■□□□□ 0.02
UPF3A-211ENST00000618700 A0A087WW49 117 aa15.18■□□□□ 0.02
UPF3A-211ENST00000618700 ANKRD34BA5PLL1 514 aa15.18■□□□□ 0.02
UPF3A-211ENST00000618700 DEDDO75618 318 aa15.18■□□□□ 0.02
UPF3A-211ENST00000618700 HSPB1P04792 205 aaKnown RBP15.18■□□□□ 0.02
UPF3A-211ENST00000618700 OR8U8P0C7N1 319 aa15.18■□□□□ 0.02
UPF3A-211ENST00000618700 FCGR2BP31994 310 aaPredicted RBP15.18■□□□□ 0.02
UPF3A-211ENST00000618700 MYCNOSP40205 109 aa15.18■□□□□ 0.02
UPF3A-211ENST00000618700 OPRK1P41145 380 aa15.18■□□□□ 0.02
UPF3A-211ENST00000618700 RAB11AP62491 216 aa15.18■□□□□ 0.02
UPF3A-211ENST00000618700 ZNF616Q08AN1 781 aa15.18■□□□□ 0.02
UPF3A-211ENST00000618700 TMEM14EPQ6UXP3 125 aa15.18■□□□□ 0.02
UPF3A-211ENST00000618700 OR11H1Q8NG94 326 aa15.18■□□□□ 0.02
UPF3A-211ENST00000618700 WNK1Q9H4A3 2382 aa15.18■□□□□ 0.02
UPF3A-211ENST00000618700 RPS10-NUDT3A0A1W2PQS6 291 aa15.17■□□□□ 0.02
UPF3A-211ENST00000618700 PRSS46E5RG02 174 aa15.17■□□□□ 0.02
UPF3A-211ENST00000618700 H0YIZ8 118 aa15.17■□□□□ 0.02
UPF3A-211ENST00000618700 BMPR1BO00238 502 aa15.17■□□□□ 0.02
UPF3A-211ENST00000618700 IGHV3-48P01763 117 aa15.17■□□□□ 0.02
UPF3A-211ENST00000618700 IFNA4P05014 189 aa15.17■□□□□ 0.02
UPF3A-211ENST00000618700 GIPP09681 153 aaPredicted RBP15.17■□□□□ 0.02
UPF3A-211ENST00000618700 LORP23490 312 aaPredicted RBP15.17■□□□□ 0.02
UPF3A-211ENST00000618700 LRRC37A5PQ49AS3 106 aa15.17■□□□□ 0.02
UPF3A-211ENST00000618700 CLEC19AQ6UXS0 136 aa15.17■□□□□ 0.02
UPF3A-211ENST00000618700 OR1N2Q8NGR9 330 aa15.17■□□□□ 0.02
UPF3A-211ENST00000618700 ASB13Q8WXK3 278 aa15.17■□□□□ 0.02
UPF3A-211ENST00000618700 ZNF436Q9C0F3 470 aaPredicted RBP15.17■□□□□ 0.02
UPF3A-211ENST00000618700 RANGRFQ9HD47 186 aaPredicted RBP15.17■□□□□ 0.02
UPF3A-211ENST00000618700 CMYA5Q8N3K9 4069 aa15.16■□□□□ 0.02
UPF3A-211ENST00000618700 LINC01619G3V211 115 aa15.16■□□□□ 0.02
UPF3A-211ENST00000618700 L7N2F9 121 aa15.16■□□□□ 0.02
UPF3A-211ENST00000618700 MPC2O95563 127 aa15.16■□□□□ 0.02
UPF3A-211ENST00000618700 PVALBP20472 110 aaPredicted RBP15.16■□□□□ 0.02
UPF3A-211ENST00000618700 GPR183P32249 361 aa15.16■□□□□ 0.02
UPF3A-211ENST00000618700 MFAP4P55083 255 aa15.16■□□□□ 0.02
UPF3A-211ENST00000618700 VAMP2P63027 116 aa15.16■□□□□ 0.02
UPF3A-211ENST00000618700 CD69Q07108 199 aa15.16■□□□□ 0.02
UPF3A-211ENST00000618700 MLANAQ16655 118 aa15.16■□□□□ 0.02
UPF3A-211ENST00000618700 TXN2Q99757 166 aa15.16■□□□□ 0.02
UPF3A-211ENST00000618700 OR5AC2Q9NZP5 309 aa15.16■□□□□ 0.02
UPF3A-211ENST00000618700 MRPL36Q9P0J6 103 aaKnown RBP15.16■□□□□ 0.02
UPF3A-211ENST00000618700 PAIP2BQ9ULR5 123 aaKnown RBP15.16■□□□□ 0.02
UPF3A-211ENST00000618700 PMS2P5A8MQ11 134 aa15.15■□□□□ 0.02
UPF3A-211ENST00000618700 PF4P02776 101 aa15.15■□□□□ 0.02
UPF3A-211ENST00000618700 CLEC3BP05452 202 aa15.15■□□□□ 0.02
UPF3A-211ENST00000618700 PET100P0DJ07 73 aa15.15■□□□□ 0.02
UPF3A-211ENST00000618700 SLC25A4P12235 298 aa15.15■□□□□ 0.02
UPF3A-211ENST00000618700 ETFRF1Q6IPR1 90 aa15.15■□□□□ 0.02
UPF3A-211ENST00000618700 SLC16A13Q7RTY0 426 aa15.15■□□□□ 0.02
UPF3A-211ENST00000618700 BSCL2Q96G97 398 aaPredicted RBP15.15■□□□□ 0.02
UPF3A-211ENST00000618700 LYRM2Q9NU23 88 aaPredicted RBP15.15■□□□□ 0.02
UPF3A-211ENST00000618700 PKD1L1Q8TDX9 2849 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 PPP5D1E7EU14 171 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 RLN2P04090 185 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 METTL15P1P0C7V9 234 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 ZP3P21754 424 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 ARL3P36405 182 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 GPX4P36969 197 aaPredicted RBP15.14■□□□□ 0.01
UPF3A-211ENST00000618700 Q56UQ5 140 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 ACSM6Q6P461 480 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 PRSS54Q6PEW0 395 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 LINC00482Q8N8I6 264 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 TMEM116Q8NCL8 245 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 OR4X1Q8NH49 305 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 CHAC2Q8WUX2 184 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 CACNG8Q8WXS5 425 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 DPF1Q92782 380 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 RNF126Q9BV68 326 aa15.14■□□□□ 0.01
UPF3A-211ENST00000618700 GAR1Q9NY12 217 aaKnown RBP15.14■□□□□ 0.01
UPF3A-211ENST00000618700 OR2T8A6NH00 312 aa15.13■□□□□ 0.01
UPF3A-211ENST00000618700 E5RGE8 158 aa15.13■□□□□ 0.01
UPF3A-211ENST00000618700 TGOLN2O43493 480 aa15.13■□□□□ 0.01
UPF3A-211ENST00000618700 CCNKO75909 580 aa15.13■□□□□ 0.01
UPF3A-211ENST00000618700 HOXD3P31249 432 aaPredicted RBP15.13■□□□□ 0.01
UPF3A-211ENST00000618700 NPBWR1P48145 328 aa15.13■□□□□ 0.01
UPF3A-211ENST00000618700 CAV2P51636 162 aa15.13■□□□□ 0.01
UPF3A-211ENST00000618700 SLURP1P55000 103 aa15.13■□□□□ 0.01
UPF3A-211ENST00000618700 RAP2BP61225 183 aa15.13■□□□□ 0.01
UPF3A-211ENST00000618700 PRR31Q5SQ13 230 aa15.13■□□□□ 0.01
UPF3A-211ENST00000618700 SPSB3Q6PJ21 355 aa15.13■□□□□ 0.01
UPF3A-211ENST00000618700 UBAC2Q8NBM4 344 aa15.13■□□□□ 0.01
UPF3A-211ENST00000618700 TRAV14DV4A0A0A6YYC5 116 aa15.12■□□□□ 0.01
UPF3A-211ENST00000618700 FAM24AA6NFZ4 105 aa15.12■□□□□ 0.01
UPF3A-211ENST00000618700 GGCTO75223 188 aaKnown RBP15.12■□□□□ 0.01
UPF3A-211ENST00000618700 CLN5O75503 358 aa15.12■□□□□ 0.01
UPF3A-211ENST00000618700 CTSGP08311 255 aa15.12■□□□□ 0.01
UPF3A-211ENST00000618700 LYL1P12980 280 aa15.12■□□□□ 0.01
UPF3A-211ENST00000618700 ADMP35318 185 aa15.12■□□□□ 0.01
UPF3A-211ENST00000618700 P2RY1P47900 373 aa15.12■□□□□ 0.01
UPF3A-211ENST00000618700 OR8G2PQ6IF36 304 aa15.12■□□□□ 0.01
UPF3A-211ENST00000618700 ACOT7LQ6ZUV0 252 aa15.12■□□□□ 0.01
UPF3A-211ENST00000618700 HAPLN4Q86UW8 402 aa15.12■□□□□ 0.01
UPF3A-211ENST00000618700 CHRDL1Q9BU40 450 aa15.12■□□□□ 0.01
UPF3A-211ENST00000618700 MBD2Q9UBB5 411 aa15.12■□□□□ 0.01
UPF3A-211ENST00000618700 IGSF23A1L1A6 192 aa15.11■□□□□ 0.01
UPF3A-211ENST00000618700 BCAP31P51572 246 aa15.11■□□□□ 0.01
UPF3A-211ENST00000618700 RND2P52198 227 aa15.11■□□□□ 0.01
UPF3A-211ENST00000618700 ARL16Q0P5N6 197 aa15.11■□□□□ 0.01
UPF3A-211ENST00000618700 TMEM252Q8N6L7 170 aa15.11■□□□□ 0.01
UPF3A-211ENST00000618700 ZNF414Q96IQ9 312 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms