RNA–Protein interactions for RNA: ENST00000600841.1

NOTCH3-205, Transcript of notch 3, humanhuman

TSL 2

Gene NOTCH3, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-205ENST00000600841 ZNF414Q96IQ9 312 aa12.59□□□□□ -0.39
NOTCH3-205ENST00000600841 OR10C1Q96KK4 312 aa12.59□□□□□ -0.39
NOTCH3-205ENST00000600841 HEYLQ9NQ87 328 aaPredicted RBP12.59□□□□□ -0.39
NOTCH3-205ENST00000600841 PRR13Q9NZ81 148 aa12.59□□□□□ -0.39
NOTCH3-205ENST00000600841 CACFD1Q9UGQ2 172 aa12.59□□□□□ -0.39
NOTCH3-205ENST00000600841 SMPXQ9UHP9 88 aa12.59□□□□□ -0.39
NOTCH3-205ENST00000600841 IGHV7-4-1A0A0J9YVY3 117 aa12.58□□□□□ -0.4
NOTCH3-205ENST00000600841 CEBPZOSA8MTT3 80 aa12.58□□□□□ -0.4
NOTCH3-205ENST00000600841 SULT1A3P0DMM9 295 aa12.58□□□□□ -0.4
NOTCH3-205ENST00000600841 SULT1A4P0DMN0 295 aa12.58□□□□□ -0.4
NOTCH3-205ENST00000600841 SRPXP78539 464 aa12.58□□□□□ -0.4
NOTCH3-205ENST00000600841 BSXQ3C1V8 233 aa12.58□□□□□ -0.4
NOTCH3-205ENST00000600841 SPANXN2Q5MJ10 180 aa12.58□□□□□ -0.4
NOTCH3-205ENST00000600841 TMEM116Q8NCL8 245 aa12.58□□□□□ -0.4
NOTCH3-205ENST00000600841 DEDD2Q8WXF8 326 aa12.58□□□□□ -0.4
NOTCH3-205ENST00000600841 GINS3Q9BRX5 216 aa12.58□□□□□ -0.4
NOTCH3-205ENST00000600841 TRAV14DV4A0A0A6YYC5 116 aa12.57□□□□□ -0.4
NOTCH3-205ENST00000600841 SUPT4H1P63272 117 aaKnown RBP12.57□□□□□ -0.4
NOTCH3-205ENST00000600841 TMED4Q7Z7H5 227 aa12.57□□□□□ -0.4
NOTCH3-205ENST00000600841 LGI3Q8N145 548 aa12.57□□□□□ -0.4
NOTCH3-205ENST00000600841 RHPN1-AS1Q9BWJ2 59 aa12.57□□□□□ -0.4
NOTCH3-205ENST00000600841 HIPK2Q9H2X6 1198 aa12.57□□□□□ -0.4
NOTCH3-205ENST00000600841 A0A0B4J2A0 478 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 PIGBOS1A0A0B4J2F0 54 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 RPS10-NUDT3A0A1W2PQS6 291 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 OR4C46A6NHA9 309 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 CHEK1O14757 476 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 SCGB2A1O75556 95 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 TMEM50AO95807 157 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 BMI1P35226 326 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 CCR6P51684 374 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 TOMM20LQ6UXN7 152 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 ZNF600Q6ZNG1 722 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 SLC24A4Q8NFF2 622 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 RNF2Q99496 336 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 FNDC4Q9H6D8 234 aaPredicted RBP12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 RETNQ9HD89 108 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 SHPKQ9UHJ6 478 aa12.56□□□□□ -0.4
NOTCH3-205ENST00000600841 IGHV3-49A0A0A0MS15 119 aa12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 CLN5O75503 358 aa12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 NXPH3O95157 252 aa12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 LYL1P12980 280 aa12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 SMCO1Q147U7 214 aa12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 MLANAQ16655 118 aa12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 NMSQ5H8A3 153 aa12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 LYZL2Q7Z4W2 148 aa12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 OR4X1Q8NH49 305 aa12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 SLC25A21Q9BQT8 299 aaPredicted RBP12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 GGTLC1Q9BX51 225 aa12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 EDA2RQ9HAV5 297 aa12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 MRPL36Q9P0J6 103 aaKnown RBP12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 PUS1Q9Y606 427 aaKnown RBP eCLIP12.55□□□□□ -0.4
NOTCH3-205ENST00000600841 LOC102724200A0A096LPH7 203 aaPredicted RBP12.54□□□□□ -0.4
NOTCH3-205ENST00000600841 C2orf83Q53S99 150 aa12.54□□□□□ -0.4
NOTCH3-205ENST00000600841 TMEM128Q5BJH2 165 aa12.54□□□□□ -0.4
NOTCH3-205ENST00000600841 NOXA1Q86UR1 476 aa12.54□□□□□ -0.4
NOTCH3-205ENST00000600841 RNASEH2CQ8TDP1 164 aaKnown RBP12.54□□□□□ -0.4
NOTCH3-205ENST00000600841 SRRQ9GZT4 340 aa12.54□□□□□ -0.4
NOTCH3-205ENST00000600841 UBQLN2Q9UHD9 624 aa12.54□□□□□ -0.4
NOTCH3-205ENST00000600841 IGHV3OR16-13A0A075B7E8 117 aa12.53□□□□□ -0.4
NOTCH3-205ENST00000600841 IGHV3-74A0A0B4J1X5 117 aa12.53□□□□□ -0.4
NOTCH3-205ENST00000600841 A6NHS1 94 aa12.53□□□□□ -0.4
NOTCH3-205ENST00000600841 VAMP1P23763 118 aa12.53□□□□□ -0.4
NOTCH3-205ENST00000600841 INPP1P49441 399 aa12.53□□□□□ -0.4
NOTCH3-205ENST00000600841 TNFRSF9Q07011 255 aa12.53□□□□□ -0.4
NOTCH3-205ENST00000600841 CASC10Q5T4H9 136 aa12.53□□□□□ -0.4
NOTCH3-205ENST00000600841 FAM110AQ9BQ89 295 aa12.53□□□□□ -0.4
NOTCH3-205ENST00000600841 ZFAND3Q9H8U3 227 aa12.53□□□□□ -0.4
NOTCH3-205ENST00000600841 HSPB7Q9UBY9 170 aa12.53□□□□□ -0.4
NOTCH3-205ENST00000600841 TRAV30A0A087WSZ9 112 aa12.52□□□□□ -0.41
NOTCH3-205ENST00000600841 A0A1B0GU03 582 aa12.52□□□□□ -0.41
NOTCH3-205ENST00000600841 DUXBA0A1W2PPF3 345 aa12.52□□□□□ -0.41
NOTCH3-205ENST00000600841 CD5P06127 495 aa12.52□□□□□ -0.41
NOTCH3-205ENST00000600841 SLC25A4P12235 298 aa12.52□□□□□ -0.41
NOTCH3-205ENST00000600841 NPY1RP25929 384 aa12.52□□□□□ -0.41
NOTCH3-205ENST00000600841 ODF3L2Q3SX64 289 aa12.52□□□□□ -0.41
NOTCH3-205ENST00000600841 TRIQKQ629K1 86 aa12.52□□□□□ -0.41
NOTCH3-205ENST00000600841 RYR3Q15413 4870 aa12.52□□□□□ -0.41
NOTCH3-205ENST00000600841 IGKV3-7A0A075B6H7 116 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 IFNA10P01566 189 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 TFPI2P48307 235 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 RND2P52198 227 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 RBMS2Q15434 407 aaKnown RBP12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 CNPY1Q3B7I2 92 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 FAM90A2PQ658T7 463 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 ETFRF1Q6IPR1 90 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 PRSS54Q6PEW0 395 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 TCF24Q7RTU0 167 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 OR1S2Q8NGQ3 325 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 OR1S1Q8NH92 325 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 DTD1Q8TEA8 209 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 TMEM170AQ8WVE7 144 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 ST8SIA2Q92186 375 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 METTL26Q96S19 204 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 RBKSQ9H477 322 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 TMEM231Q9H6L2 316 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 VSIRQ9H7M9 311 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 U3KQ87 197 aa12.51□□□□□ -0.41
NOTCH3-205ENST00000600841 STARD9Q9P2P6 4700 aa12.5□□□□□ -0.41
NOTCH3-205ENST00000600841 IGKV1-17P01599 117 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms