RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	ZNF486	Q96H40	463 aa	Predicted RBP	12.88	□□□□□ -0.35
SHKBP1-223	ENST00000600552	NAA50	Q9GZZ1	169 aa	Known RBP	12.88	□□□□□ -0.35
SHKBP1-223	ENST00000600552	TMEM231	Q9H6L2	316 aa		12.88	□□□□□ -0.35
SHKBP1-223	ENST00000600552	VSIR	Q9H7M9	311 aa		12.88	□□□□□ -0.35
SHKBP1-223	ENST00000600552	ZFAND3	Q9H8U3	227 aa		12.88	□□□□□ -0.35
SHKBP1-223	ENST00000600552	AGRN	O00468	2067 aa		12.88	□□□□□ -0.35
SHKBP1-223	ENST00000600552	CD5	P06127	495 aa		12.87	□□□□□ -0.35
SHKBP1-223	ENST00000600552	TIGIT	Q495A1	244 aa		12.87	□□□□□ -0.35
SHKBP1-223	ENST00000600552	CCDC71L	Q8N9Z2	235 aa		12.87	□□□□□ -0.35
SHKBP1-223	ENST00000600552	OR13C8	Q8NGS7	320 aa		12.87	□□□□□ -0.35
SHKBP1-223	ENST00000600552	ZFAND1	Q8TCF1	268 aa		12.87	□□□□□ -0.35
SHKBP1-223	ENST00000600552	MARCH1	Q8TCQ1	289 aa		12.87	□□□□□ -0.35
SHKBP1-223	ENST00000600552	METTL26	Q96S19	204 aa		12.87	□□□□□ -0.35
SHKBP1-223	ENST00000600552	KNCN	A6PVL3	124 aa		12.86	□□□□□ -0.35
SHKBP1-223	ENST00000600552	LHFPL1	Q86WI0	220 aa		12.86	□□□□□ -0.35
SHKBP1-223	ENST00000600552	AP3S1	Q92572	193 aa		12.86	□□□□□ -0.35
SHKBP1-223	ENST00000600552	MFF	Q9GZY8	342 aa		12.86	□□□□□ -0.35
SHKBP1-223	ENST00000600552	FNDC4	Q9H6D8	234 aa	Predicted RBP	12.86	□□□□□ -0.35
SHKBP1-223	ENST00000600552		A0A0G2JRQ6	117 aa		12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552		A0A1W2PS18	150 aa		12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552	CORT	O00230	105 aa		12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552	CLN5	O75503	358 aa		12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552	RAB3D	O95716	219 aa		12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552	ZNF688	P0C7X2	276 aa		12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552		P0C879	139 aa		12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552	ZNF182	P17025	639 aa	Predicted RBP	12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552	P2RY1	P47900	373 aa		12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552	ARRDC1	Q8N5I2	433 aa		12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552	TERB2	Q8NHR7	220 aa		12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552	NARS2	Q96I59	477 aa	Known RBP	12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552	ABHD1	Q96SE0	405 aa		12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552	MTFP1	Q9UDX5	166 aa		12.85	□□□□□ -0.35
SHKBP1-223	ENST00000600552	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	12.84	□□□□□ -0.35
SHKBP1-223	ENST00000600552	SCGB2A1	O75556	95 aa		12.84	□□□□□ -0.35
SHKBP1-223	ENST00000600552	NXPH3	O95157	252 aa		12.84	□□□□□ -0.35
SHKBP1-223	ENST00000600552	GPR107	Q5VW38	600 aa		12.84	□□□□□ -0.35
SHKBP1-223	ENST00000600552	FAAP20	Q6NZ36	180 aa		12.84	□□□□□ -0.35
SHKBP1-223	ENST00000600552		Q6ZRM9	215 aa		12.84	□□□□□ -0.35
SHKBP1-223	ENST00000600552	HEYL	Q9NQ87	328 aa	Predicted RBP	12.84	□□□□□ -0.35
SHKBP1-223	ENST00000600552	C14orf166	Q9Y224	244 aa	Known RBP	12.84	□□□□□ -0.35
SHKBP1-223	ENST00000600552	IGLL5	B9A064	214 aa		12.83	□□□□□ -0.36
SHKBP1-223	ENST00000600552	RGS5	O15539	181 aa		12.83	□□□□□ -0.36
SHKBP1-223	ENST00000600552	OR5AC1	P0C628	307 aa		12.83	□□□□□ -0.36
SHKBP1-223	ENST00000600552	TAS2R19	P59542	299 aa		12.83	□□□□□ -0.36
SHKBP1-223	ENST00000600552	LGALS9C	Q6DKI2	356 aa		12.83	□□□□□ -0.36
SHKBP1-223	ENST00000600552	STEAP1B	Q6NZ63	245 aa		12.83	□□□□□ -0.36
SHKBP1-223	ENST00000600552	TMEM229B	Q8NBD8	167 aa		12.83	□□□□□ -0.36
SHKBP1-223	ENST00000600552	OR4X1	Q8NH49	305 aa		12.83	□□□□□ -0.36
SHKBP1-223	ENST00000600552	C2CD4C	Q8TF44	421 aa		12.83	□□□□□ -0.36
SHKBP1-223	ENST00000600552	C11orf68	Q9H3H3	251 aa	Known RBP	12.83	□□□□□ -0.36
SHKBP1-223	ENST00000600552	CLEC5A	Q9NY25	188 aa		12.83	□□□□□ -0.36
SHKBP1-223	ENST00000600552	CEBPZOS	A8MTT3	80 aa		12.82	□□□□□ -0.36
SHKBP1-223	ENST00000600552	TBP	P20226	339 aa		12.82	□□□□□ -0.36
SHKBP1-223	ENST00000600552	UCP1	P25874	307 aa		12.82	□□□□□ -0.36
SHKBP1-223	ENST00000600552	SPCS3	P61009	180 aa		12.82	□□□□□ -0.36
SHKBP1-223	ENST00000600552	DHRS2	Q13268	280 aa		12.82	□□□□□ -0.36
SHKBP1-223	ENST00000600552	MEF2D	Q14814	521 aa		12.82	□□□□□ -0.36
SHKBP1-223	ENST00000600552	ACTL10	Q5JWF8	245 aa		12.82	□□□□□ -0.36
SHKBP1-223	ENST00000600552	GRAMD2B	Q96HH9	432 aa		12.82	□□□□□ -0.36
SHKBP1-223	ENST00000600552	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	12.82	□□□□□ -0.36
SHKBP1-223	ENST00000600552	KMT2A	Q03164	3969 aa		12.81	□□□□□ -0.36
SHKBP1-223	ENST00000600552	TRAV2	A0A0B4J234	112 aa		12.81	□□□□□ -0.36
SHKBP1-223	ENST00000600552	RPS10-NUDT3	A0A1W2PQS6	291 aa		12.81	□□□□□ -0.36
SHKBP1-223	ENST00000600552	INS-IGF2	F8WCM5	200 aa		12.81	□□□□□ -0.36
SHKBP1-223	ENST00000600552		K7EQG2	157 aa		12.81	□□□□□ -0.36
SHKBP1-223	ENST00000600552	RND2	P52198	227 aa		12.81	□□□□□ -0.36
SHKBP1-223	ENST00000600552	CACNG5	Q9UF02	275 aa		12.81	□□□□□ -0.36
SHKBP1-223	ENST00000600552	IGHV4-28	A0A0C4DH34	117 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	IGKV1-17	P01599	117 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	CD74	P04233	296 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	CRYBB3	P26998	211 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	HTR2B	P41595	481 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	CTF1	Q16619	201 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	PVRIG	Q6DKI7	326 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	SELENOH	Q8IZQ5	122 aa	Known RBP	12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	CENPS	Q8N2Z9	138 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	LHFPL5	Q8TAF8	219 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552		Q8WTZ3	238 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	C15orf40	Q8WUR7	153 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	GPR146	Q96CH1	333 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	TMEM222	Q9H0R3	208 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	NAA60	Q9H7X0	242 aa		12.8	□□□□□ -0.36
SHKBP1-223	ENST00000600552	FRAS1	Q86XX4	4008 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	TRAV30	A0A087WSZ9	112 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	DISC1	C4P0D8	188 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	RBMY1A1	P0DJD3	496 aa	Known RBP	12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	RBMY1C	P0DJD4	496 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	C4BPB	P20851	252 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	OR10J1	P30954	320 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	RPL5	P46777	297 aa	Known RBP	12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	PRR20E	P86478	221 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	PRR20C	P86479	221 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	PRR20D	P86480	221 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	PRR20B	P86481	221 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	PRR20A	P86496	221 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	DHODH	Q02127	395 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	RBMY1F	Q15415	496 aa	Known RBP	12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	PSMG4	Q5JS54	123 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	TMEM268	Q5VZI3	342 aa		12.79	□□□□□ -0.36
SHKBP1-223	ENST00000600552	TRPT1	Q86TN4	253 aa	Known RBP	12.79	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 106.3 ms