RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 TMEM187Q14656 261 aa10.66□□□□□ -0.7
LIG1-218ENST00000599322 OR1S1Q8NH92 325 aa10.66□□□□□ -0.7
LIG1-218ENST00000599322 SPAG8Q99932 426 aaPredicted RBP10.66□□□□□ -0.7
LIG1-218ENST00000599322 TMEM231Q9H6L2 316 aa10.66□□□□□ -0.7
LIG1-218ENST00000599322 A0A0G2JRQ6 117 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 DUXBA0A1W2PPF3 345 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 OR4C46A6NHA9 309 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 IGHV3-48P01763 117 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 CD7P09564 240 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 RNASE2P10153 161 aaKnown RBP10.65□□□□□ -0.7
LIG1-218ENST00000599322 ADMP35318 185 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 PAFAH1B2P68402 229 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 SMCO1Q147U7 214 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 ZNF600Q6ZNG1 722 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 Q6ZRM9 215 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 CENPSQ8N2Z9 138 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 TMEM116Q8NCL8 245 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 SLC24A4Q8NFF2 622 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 LHFPL5Q8TAF8 219 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 RNASEH2CQ8TDP1 164 aaKnown RBP10.65□□□□□ -0.7
LIG1-218ENST00000599322 TRIM63Q969Q1 353 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 TMEM230Q96A57 120 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 SRD5A3Q9H8P0 318 aa10.65□□□□□ -0.7
LIG1-218ENST00000599322 A0A1B0GU03 582 aa10.64□□□□□ -0.71
LIG1-218ENST00000599322 ZNF207O43670 478 aaKnown RBP10.64□□□□□ -0.71
LIG1-218ENST00000599322 IFNA10P01566 189 aa10.64□□□□□ -0.71
LIG1-218ENST00000599322 SLC25A4P12235 298 aa10.64□□□□□ -0.71
LIG1-218ENST00000599322 EDN2P20800 178 aa10.64□□□□□ -0.71
LIG1-218ENST00000599322 ATP5IP56385 69 aaPredicted RBP10.64□□□□□ -0.71
LIG1-218ENST00000599322 RBMS2Q15434 407 aaKnown RBP10.64□□□□□ -0.71
LIG1-218ENST00000599322 ZNF79Q15937 498 aa10.64□□□□□ -0.71
LIG1-218ENST00000599322 HAGHQ16775 308 aa10.64□□□□□ -0.71
LIG1-218ENST00000599322 AARDQ4LEZ3 155 aa10.64□□□□□ -0.71
LIG1-218ENST00000599322 DEFB125Q8N687 156 aa10.64□□□□□ -0.71
LIG1-218ENST00000599322 SMPXQ9UHP9 88 aa10.64□□□□□ -0.71
LIG1-218ENST00000599322 SELENOKQ9Y6D0 94 aa10.64□□□□□ -0.71
LIG1-218ENST00000599322 IGHV3OR16-8A0A075B7F1 116 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 IGHV7-4-1A0A0J9YVY3 117 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 A0A1W2PS18 150 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 F8W735 103 aaPredicted RBP10.63□□□□□ -0.71
LIG1-218ENST00000599322 TSPAN4O14817 238 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 CLN5O75503 358 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 MED6O75586 246 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 TMEM50AO95807 157 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 NPY1RP25929 384 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 C2orf83Q53S99 150 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 LYZL2Q7Z4W2 148 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 OR4X1Q8NH49 305 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 TM2D3Q9BRN9 247 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 RHPN1-AS1Q9BWJ2 59 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 SRRQ9GZT4 340 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 U3KQ87 197 aa10.63□□□□□ -0.71
LIG1-218ENST00000599322 C3orf84H3BNL1 204 aa10.62□□□□□ -0.71
LIG1-218ENST00000599322 NXPH3O95157 252 aa10.62□□□□□ -0.71
LIG1-218ENST00000599322 NPPCP23582 126 aa10.62□□□□□ -0.71
LIG1-218ENST00000599322 UBE2MP61081 183 aaKnown RBP10.62□□□□□ -0.71
LIG1-218ENST00000599322 RPL11P62913 178 aaKnown RBP10.62□□□□□ -0.71
LIG1-218ENST00000599322 RPP30P78346 268 aaKnown RBP10.62□□□□□ -0.71
LIG1-218ENST00000599322 TNFRSF9Q07011 255 aa10.62□□□□□ -0.71
LIG1-218ENST00000599322 CNPY1Q3B7I2 92 aa10.62□□□□□ -0.71
LIG1-218ENST00000599322 DTD1Q8TEA8 209 aa10.62□□□□□ -0.71
LIG1-218ENST00000599322 Q8WTZ3 238 aa10.62□□□□□ -0.71
LIG1-218ENST00000599322 GRAMD2BQ96HH9 432 aa10.62□□□□□ -0.71
LIG1-218ENST00000599322 OR10C1Q96KK4 312 aa10.62□□□□□ -0.71
LIG1-218ENST00000599322 C7orf50Q9BRJ6 194 aaKnown RBP10.62□□□□□ -0.71
LIG1-218ENST00000599322 TMED3Q9Y3Q3 217 aa10.62□□□□□ -0.71
LIG1-218ENST00000599322 PUS1Q9Y606 427 aaKnown RBP eCLIP10.62□□□□□ -0.71
LIG1-218ENST00000599322 DYNC2H1Q8NCM8 4307 aaKnown RBP10.62□□□□□ -0.71
LIG1-218ENST00000599322 LOC102724200A0A096LPH7 203 aaPredicted RBP10.61□□□□□ -0.71
LIG1-218ENST00000599322 LINC00854A0A1B0GVQ3 168 aa10.61□□□□□ -0.71
LIG1-218ENST00000599322 IFNA4P05014 189 aa10.61□□□□□ -0.71
LIG1-218ENST00000599322 EIF2B2P49770 351 aaKnown RBP10.61□□□□□ -0.71
LIG1-218ENST00000599322 RAB11AP62491 216 aa10.61□□□□□ -0.71
LIG1-218ENST00000599322 SUPT4H1P63272 117 aaKnown RBP10.61□□□□□ -0.71
LIG1-218ENST00000599322 PVRIGQ6DKI7 326 aa10.61□□□□□ -0.71
LIG1-218ENST00000599322 TOMM20LQ6UXN7 152 aa10.61□□□□□ -0.71
LIG1-218ENST00000599322 METTL26Q96S19 204 aa10.61□□□□□ -0.71
LIG1-218ENST00000599322 GGTLC1Q9BX51 225 aa10.61□□□□□ -0.71
LIG1-218ENST00000599322 PRR13Q9NZ81 148 aa10.61□□□□□ -0.71
LIG1-218ENST00000599322 HSPB7Q9UBY9 170 aa10.61□□□□□ -0.71
LIG1-218ENST00000599322 PFDN2Q9UHV9 154 aa10.61□□□□□ -0.71
LIG1-218ENST00000599322 IGHV3-49A0A0A0MS15 119 aa10.6□□□□□ -0.71
LIG1-218ENST00000599322 DNASE2O00115 360 aaPredicted RBP10.6□□□□□ -0.71
LIG1-218ENST00000599322 CHEK1O14757 476 aa10.6□□□□□ -0.71
LIG1-218ENST00000599322 SFT2D2O95562 160 aa10.6□□□□□ -0.71
LIG1-218ENST00000599322 IFNA21P01568 189 aa10.6□□□□□ -0.71
LIG1-218ENST00000599322 BSXQ3C1V8 233 aa10.6□□□□□ -0.71
LIG1-218ENST00000599322 NMSQ5H8A3 153 aa10.6□□□□□ -0.71
LIG1-218ENST00000599322 OR1S2Q8NGQ3 325 aa10.6□□□□□ -0.71
LIG1-218ENST00000599322 COQ8AQ8NI60 647 aa10.6□□□□□ -0.71
LIG1-218ENST00000599322 CIB3Q96Q77 187 aaPredicted RBP10.6□□□□□ -0.71
LIG1-218ENST00000599322 RBKSQ9H477 322 aa10.6□□□□□ -0.71
LIG1-218ENST00000599322 SACSQ9NZJ4 4579 aa10.6□□□□□ -0.71
LIG1-218ENST00000599322 FAM90A26D6RGX4 464 aa10.59□□□□□ -0.71
LIG1-218ENST00000599322 FABP1P07148 127 aa10.59□□□□□ -0.71
LIG1-218ENST00000599322 SLC25A6P12236 298 aa10.59□□□□□ -0.71
LIG1-218ENST00000599322 RND2P52198 227 aa10.59□□□□□ -0.71
LIG1-218ENST00000599322 APOC4P55056 127 aa10.59□□□□□ -0.71
LIG1-218ENST00000599322 TCF24Q7RTU0 167 aa10.59□□□□□ -0.71
LIG1-218ENST00000599322 LRTM2Q8N967 370 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms