RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 PSMB2P49721 201 aa10.25□□□□□ -0.77
LIG1-207ENST00000594759 DSCR4P56555 118 aaPredicted RBP10.25□□□□□ -0.77
LIG1-207ENST00000594759 CT55Q8WUE5 264 aa10.25□□□□□ -0.77
LIG1-207ENST00000594759 NEUROG1Q92886 237 aa10.25□□□□□ -0.77
LIG1-207ENST00000594759 TMUB1Q9BVT8 246 aa10.25□□□□□ -0.77
LIG1-207ENST00000594759 PNRC2Q9NPJ4 139 aaKnown RBP10.25□□□□□ -0.77
LIG1-207ENST00000594759 TCF19Q9Y242 345 aa10.25□□□□□ -0.77
LIG1-207ENST00000594759 C3orf80F5H4A9 247 aa10.25□□□□□ -0.77
LIG1-207ENST00000594759 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.25□□□□□ -0.77
LIG1-207ENST00000594759 PLAUP00749 431 aa10.25□□□□□ -0.77
LIG1-207ENST00000594759 OR9G9P0C7N8 305 aa10.25□□□□□ -0.77
LIG1-207ENST00000594759 IL11RAQ14626 422 aa10.25□□□□□ -0.77
LIG1-207ENST00000594759 LAMA3Q16787 3333 aa10.25□□□□□ -0.77
LIG1-207ENST00000594759 C18orf15Q96N68 181 aa10.25□□□□□ -0.77
LIG1-207ENST00000594759 USF3Q68DE3 2245 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 hCG_38984A0A1B0GV85 526 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 FOXH1O75593 365 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 OR2H2O95918 312 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 PMS2CLQ68D20 193 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 VKORC1L1Q8N0U8 176 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 SNRNP40Q96DI7 357 aaKnown RBP10.24□□□□□ -0.77
LIG1-207ENST00000594759 PLXNA2O75051 1894 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 NCBP2LA6PVI3 153 aaKnown RBP10.24□□□□□ -0.77
LIG1-207ENST00000594759 B5MCH6 92 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 LOC102723996A0A087X1L8 192 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 A6NJY4 79 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 FOXI3A8MTJ6 420 aaPredicted RBP10.24□□□□□ -0.77
LIG1-207ENST00000594759 TIMM8AO60220 97 aaPredicted RBP10.24□□□□□ -0.77
LIG1-207ENST00000594759 CELA3AP09093 270 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 VWC2Q2TAL6 325 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 WFDC3Q8IUB2 231 aa10.24□□□□□ -0.77
LIG1-207ENST00000594759 SOX21Q9Y651 276 aaPredicted RBP10.24□□□□□ -0.77
LIG1-207ENST00000594759 TMSB15BA0A087X1C1 80 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 C9orf172C9J069 976 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 PEX7O00628 323 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 AREGP15514 252 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 C10orf128Q5T292 105 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 LINC00470Q9BZP3 86 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 VCX2Q9H322 139 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 RPP21Q9H633 154 aaKnown RBP10.23□□□□□ -0.77
LIG1-207ENST00000594759 LSM4Q9Y4Z0 139 aaKnown RBP10.23□□□□□ -0.77
LIG1-207ENST00000594759 NCOA6Q14686 2063 aaPredicted RBP10.23□□□□□ -0.77
LIG1-207ENST00000594759 MT-CO3P00414 261 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 CELA3BP08861 270 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 GAGE2BQ13066 116 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 TBC1D28Q2M2D7 210 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 GAGE2EQ4V326 116 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 SFTA2Q6UW10 78 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 RBPMS2Q6ZRY4 209 aaKnown RBP10.23□□□□□ -0.77
LIG1-207ENST00000594759 ATP5L2Q7Z4Y8 100 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 SRSF12Q8WXF0 261 aaKnown RBP10.23□□□□□ -0.77
LIG1-207ENST00000594759 C19orf24Q9BVV8 132 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 GAGE2DQ9UEU5 116 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 K7EN84 100 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 SMAD7O15105 426 aaKnown RBP10.23□□□□□ -0.77
LIG1-207ENST00000594759 RAC3P60763 192 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 PRNTQ86SH4 94 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 FER1L6-AS2Q96M78 137 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 PLSCR4Q9NRQ2 329 aa10.23□□□□□ -0.77
LIG1-207ENST00000594759 TRBV20OR9-2A0A075B6H5 130 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 F8W1H4 67 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 ANOS1P23352 680 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 CKS2P33552 79 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 SPINK14Q6IE38 97 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 VGLL1Q99990 258 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 C11orf1Q9H5F2 150 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 CCL3P10147 92 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 PTGDSP41222 190 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 ERVK11-1P61568 191 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 PCSK4Q6UW60 755 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 OR52E5Q8NH55 327 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 C1QTNF5Q9BXJ0 243 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 GAGE5Q13069 117 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 GAGE6Q13070 117 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 RPEQ96AT9 228 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 UBTD1Q9HAC8 227 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 RNF114Q9Y508 228 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 C5orf42Q9H799 3197 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 A0A0J9YW62 118 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 F2RL2O00254 374 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 LGALS7P47929 136 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 SMIM20Q8N5G0 67 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 SYT8Q8NBV8 401 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 TP73-AS1Q9UF72 201 aa10.22□□□□□ -0.77
LIG1-207ENST00000594759 PLCE1Q9P212 2302 aa10.21□□□□□ -0.77
LIG1-207ENST00000594759 TRAV5A0A0B4J249 113 aa10.21□□□□□ -0.77
LIG1-207ENST00000594759 EFNA2O43921 213 aa10.21□□□□□ -0.77
LIG1-207ENST00000594759 RPL13AP40429 203 aaKnown RBP10.21□□□□□ -0.77
LIG1-207ENST00000594759 KIR2DS2P43631 304 aa10.21□□□□□ -0.77
LIG1-207ENST00000594759 C3AR1Q16581 482 aa10.21□□□□□ -0.77
LIG1-207ENST00000594759 SRSF7Q16629 238 aaKnown RBP eCLIP10.21□□□□□ -0.77
LIG1-207ENST00000594759 HIF1ANQ9NWT6 349 aa10.21□□□□□ -0.77
LIG1-207ENST00000594759 PKDREJQ9NTG1 2253 aa10.21□□□□□ -0.77
LIG1-207ENST00000594759 A0A1B0GUT8 65 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 SYNGR3O43761 229 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 PLA2G5P39877 138 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 HSPE1P61604 102 aaKnown RBP10.21□□□□□ -0.78
LIG1-207ENST00000594759 ZNF585BQ52M93 769 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 DEFB124Q8NES8 71 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 MYOZ3Q8TDC0 251 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms