RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	CXCL8	P10145	99 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	ERG	P11308	486 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	OMG	P23515	440 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	SSTR5	P35346	364 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	GUCA1A	P43080	201 aa	Predicted RBP	3.55	□□□□□ -1.84
SS18-223	ENST00000583595	GNB2	P62879	340 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	PSG9	Q00887	426 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF117	Q03924	483 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	HSD52	Q0P140	79 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	SMAGP	Q0VAQ4	97 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595		Q499Y3	187 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF493	Q6ZR52	646 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	LRP11	Q86VZ4	500 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	SAXO1	Q8IYX7	474 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	OR8I2	Q8N0Y5	310 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	TMEM256	Q8N2U0	113 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	SIGLECL1	Q8N7X8	197 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595		Q8N976	141 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	ZIC4	Q8N9L1	334 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	C11orf72	Q8NBR9	251 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	OR5A1	Q8NGJ0	315 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	CLDND2	Q8NHS1	167 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	SLC25A40	Q8TBP6	338 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	MRAP	Q8TCY5	172 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	SKA2	Q8WVK7	121 aa	Predicted RBP	3.55	□□□□□ -1.84
SS18-223	ENST00000583595	OR5P2	Q8WZ92	322 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF689	Q96CS4	500 aa	Predicted RBP	3.55	□□□□□ -1.84
SS18-223	ENST00000583595	NEURL3	Q96EH8	262 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	PARP12	Q9H0J9	701 aa	Known RBP	3.55	□□□□□ -1.84
SS18-223	ENST00000583595	OR51I2	Q9H344	312 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	EDA2R	Q9HAV5	297 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	BCL2L10	Q9HD36	194 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	MANBAL	Q9NQG1	85 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	SPANXA1	Q9NS26	97 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	AK3	Q9UIJ7	227 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	TRAPPC1	Q9Y5R8	145 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	RFNG	Q9Y644	331 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	KCNE3	Q9Y6H6	103 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	PXMP4	Q9Y6I8	212 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	PDE4DIP	Q5VU43	2346 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF106	Q9H2Y7	1883 aa	Known RBP	3.54	□□□□□ -1.84
SS18-223	ENST00000583595	TRAV9-1	A0A075B6T8	112 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595		A0A0G2JMM0	328 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595		A0A1W2PPB8	328 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	ODAM	A1E959	279 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	TMEM189	A5PLL7	270 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	RIIAD1	A6NNX1	92 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	KIR3DP1	A8MWS1	328 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF207	O43670	478 aa	Known RBP	3.54	□□□□□ -1.84
SS18-223	ENST00000583595	MOS	P00540	346 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	CGA	P01215	116 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595		P0C879	139 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	PSMB5	P28074	263 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	GNG4	P50150	75 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	YPEL3	P61236	119 aa	Predicted RBP	3.54	□□□□□ -1.84
SS18-223	ENST00000583595	CCL20	P78556	96 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	RUNX1	Q01196	453 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595		Q0VG73	95 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	FUT5	Q11128	374 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	SRSF6	Q13247	344 aa	Known RBP	3.54	□□□□□ -1.84
SS18-223	ENST00000583595	GUSBP1	Q15486	140 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	ADIRF	Q15847	76 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	IAH1	Q2TAA2	248 aa	Predicted RBP	3.54	□□□□□ -1.84
SS18-223	ENST00000583595	CASC10	Q5T4H9	136 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	FKBP1C	Q5VVH2	108 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	FBXL22	Q6P050	247 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	MRPL54	Q6P161	138 aa	Known RBP	3.54	□□□□□ -1.84
SS18-223	ENST00000583595	CYP2G1P	Q6ZSU1	146 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	FA2H	Q7L5A8	372 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	KRTAP7-1	Q8IUC3	87 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	LGI3	Q8N145	548 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	CA13	Q8N1Q1	262 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	OR10X1	Q8NGY0	326 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	OR4K13	Q8NH42	304 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	OR2AE1	Q8NHA4	323 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	TYMSOS	Q8TAI1	123 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	GNPNAT1	Q96EK6	184 aa	Predicted RBP	3.54	□□□□□ -1.84
SS18-223	ENST00000583595	C1orf147	Q96MC9	270 aa	Predicted RBP	3.54	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF488	Q96MN9	340 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	GPR82	Q96P67	336 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	RASL11B	Q9BPW5	248 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	DERL1	Q9BUN8	251 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	SAMD10	Q9BYL1	202 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	SMIM3	Q9BZL3	60 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	GTSF1L	Q9H1H1	148 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	GPR84	Q9NQS5	396 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	MRPL16	Q9NX20	251 aa	Known RBP	3.54	□□□□□ -1.84
SS18-223	ENST00000583595	SS18L2	Q9UHA2	77 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	PSG8	Q9UQ74	426 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	C2orf16	Q68DN1	1984 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	ANK1	P16157	1881 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	PLXNA3	P51805	1871 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	KIAA1671	Q9BY89	1806 aa		3.54	□□□□□ -1.84
SS18-223	ENST00000583595	DUXB	A0A1W2PPF3	345 aa		3.53	□□□□□ -1.84
SS18-223	ENST00000583595	OR2T8	A6NH00	312 aa		3.53	□□□□□ -1.84
SS18-223	ENST00000583595	C17orf112	F2Z3M2	114 aa		3.53	□□□□□ -1.84
SS18-223	ENST00000583595		K7EP34	96 aa		3.53	□□□□□ -1.84
SS18-223	ENST00000583595	NUPR1	O60356	82 aa		3.53	□□□□□ -1.84
SS18-223	ENST00000583595	S1PR2	O95136	353 aa		3.53	□□□□□ -1.84
SS18-223	ENST00000583595	HBZ	P02008	142 aa		3.53	□□□□□ -1.84

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