RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 C1orf137Q5JT78 98 aa0.46□□□□□ -2.34
SS18-214ENST00000580003 TEX261Q6UWH6 196 aa0.46□□□□□ -2.34
SS18-214ENST00000580003 ALKAL1Q6UXT8 129 aa0.46□□□□□ -2.34
SS18-214ENST00000580003 C4orf3Q8WVX3 66 aa0.46□□□□□ -2.34
SS18-214ENST00000580003 ERGIC3Q9Y282 383 aa0.46□□□□□ -2.34
SS18-214ENST00000580003 U3KQ87 197 aa0.46□□□□□ -2.34
SS18-214ENST00000580003 DPRXA6NFQ7 191 aa0.45□□□□□ -2.34
SS18-214ENST00000580003 HLA-DRB1P01911 266 aa0.45□□□□□ -2.34
SS18-214ENST00000580003 H1FXQ92522 213 aaKnown RBP0.45□□□□□ -2.34
SS18-214ENST00000580003 TOMM6Q96B49 74 aa0.45□□□□□ -2.34
SS18-214ENST00000580003 SYNE2Q8WXH0 6885 aaKnown RBP0.45□□□□□ -2.34
SS18-214ENST00000580003 MTUS2Q5JR59 1369 aa0.45□□□□□ -2.34
SS18-214ENST00000580003 CEP192Q8TEP8 1941 aa0.44□□□□□ -2.34
SS18-214ENST00000580003 LINC00854A0A1B0GVQ3 168 aa0.44□□□□□ -2.34
SS18-214ENST00000580003 CCDC160A6NGH7 325 aa0.44□□□□□ -2.34
SS18-214ENST00000580003 ZNF736B4DX44 427 aaPredicted RBP0.44□□□□□ -2.34
SS18-214ENST00000580003 DCTN3O75935 186 aa0.44□□□□□ -2.34
SS18-214ENST00000580003 SLC35B4Q969S0 331 aa0.44□□□□□ -2.34
SS18-214ENST00000580003 NIPSNAP1Q9BPW8 284 aa0.44□□□□□ -2.34
SS18-214ENST00000580003 C11orf68Q9H3H3 251 aaKnown RBP0.44□□□□□ -2.34
SS18-214ENST00000580003 C10orf95Q9H7T3 257 aa0.44□□□□□ -2.34
SS18-214ENST00000580003 USP24Q9UPU5 2620 aa0.43□□□□□ -2.34
SS18-214ENST00000580003 TRAV9-1A0A075B6T8 112 aa0.43□□□□□ -2.34
SS18-214ENST00000580003 C20orf196Q8IYI0 205 aa0.43□□□□□ -2.34
SS18-214ENST00000580003 C3orf56Q8N813 242 aa0.43□□□□□ -2.34
SS18-214ENST00000580003 HS3ST2Q9Y278 367 aa0.43□□□□□ -2.34
SS18-214ENST00000580003 MDN1Q9NU22 5596 aa0.43□□□□□ -2.34
SS18-214ENST00000580003 PSMD12O00232 456 aaPredicted RBP0.42□□□□□ -2.34
SS18-214ENST00000580003 OR10J5Q8NHC4 309 aa0.42□□□□□ -2.34
SS18-214ENST00000580003 NHP2Q9NX24 153 aaKnown RBP0.42□□□□□ -2.34
SS18-214ENST00000580003 SLC35A3Q9Y2D2 325 aa0.42□□□□□ -2.34
SS18-214ENST00000580003 BUB1B-PAK6H3BSN5 160 aa0.41□□□□□ -2.34
SS18-214ENST00000580003 GKN2Q86XP6 184 aa0.41□□□□□ -2.34
SS18-214ENST00000580003 GPR146Q96CH1 333 aa0.41□□□□□ -2.34
SS18-214ENST00000580003 CFAP53Q96M91 514 aa0.41□□□□□ -2.34
SS18-214ENST00000580003 E9PCH4 1651 aa0.4□□□□□ -2.34
SS18-214ENST00000580003 FSIP2Q5CZC0 6907 aa0.4□□□□□ -2.35
SS18-214ENST00000580003 SNRPD2P62316 118 aaKnown RBP0.4□□□□□ -2.35
SS18-214ENST00000580003 TRAPPC6BQ86SZ2 158 aa0.4□□□□□ -2.35
SS18-214ENST00000580003 ANKRD29Q8N6D5 301 aa0.4□□□□□ -2.35
SS18-214ENST00000580003 OR52E6Q96RD3 313 aa0.4□□□□□ -2.35
SS18-214ENST00000580003 OSTCQ9NRP0 149 aa0.4□□□□□ -2.35
SS18-214ENST00000580003 TMEM56-RWDD3S4R434 201 aa0.4□□□□□ -2.35
SS18-214ENST00000580003 SNRNP200O75643 2136 aaKnown RBP0.4□□□□□ -2.35
SS18-214ENST00000580003 MCM3APO60318 1980 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 TRAV3A0A0B4J244 114 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 EXOC1LA0A1B0GW35 172 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 DNAL4O96015 105 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 TNNC2P02585 160 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 PRH1P02810 166 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 EFNA4P52798 201 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 PSME3P61289 254 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 PSG9Q00887 426 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 HIST3H3Q16695 136 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 DEFB113Q30KQ7 82 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 ITFG2Q969R8 447 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 SMR3AQ99954 134 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 NKIRAS1Q9NYS0 192 aa0.39□□□□□ -2.35
SS18-214ENST00000580003 CD79AP11912 226 aa0.38□□□□□ -2.35
SS18-214ENST00000580003 CDC42P60953 191 aa0.38□□□□□ -2.35
SS18-214ENST00000580003 CLECL1Q8IZS7 167 aa0.38□□□□□ -2.35
SS18-214ENST00000580003 OR13D1Q8NGV5 346 aa0.38□□□□□ -2.35
SS18-214ENST00000580003 MRPS26Q9BYN8 205 aaKnown RBP0.38□□□□□ -2.35
SS18-214ENST00000580003 COL1A1P02452 1464 aaPredicted RBP0.37□□□□□ -2.35
SS18-214ENST00000580003 FAAHO00519 579 aa0.37□□□□□ -2.35
SS18-214ENST00000580003 CCL25O15444 150 aa0.37□□□□□ -2.35
SS18-214ENST00000580003 CALB1P05937 261 aa0.37□□□□□ -2.35
SS18-214ENST00000580003 TPM3P06753 285 aa0.37□□□□□ -2.35
SS18-214ENST00000580003 HIST1H1TP22492 207 aaPredicted RBP0.37□□□□□ -2.35
SS18-214ENST00000580003 S100A4P26447 101 aaKnown RBP0.37□□□□□ -2.35
SS18-214ENST00000580003 SPCS3P61009 180 aa0.37□□□□□ -2.35
SS18-214ENST00000580003 FAM74A1Q5RGS3 127 aa0.37□□□□□ -2.35
SS18-214ENST00000580003 TMEM86BQ8N661 226 aa0.37□□□□□ -2.35
SS18-214ENST00000580003 ATP6V1DQ9Y5K8 247 aa0.37□□□□□ -2.35
SS18-214ENST00000580003 SPOPLQ6IQ16 392 aa0.36□□□□□ -2.35
SS18-214ENST00000580003 TEX47Q8TBZ9 253 aa0.36□□□□□ -2.35
SS18-214ENST00000580003 PTH2Q96A98 100 aa0.36□□□□□ -2.35
SS18-214ENST00000580003 DENND4CQ5VZ89 1909 aa0.36□□□□□ -2.35
SS18-214ENST00000580003 MED12Q93074 2177 aa0.36□□□□□ -2.35
SS18-214ENST00000580003 TGOLN2O43493 480 aa0.35□□□□□ -2.35
SS18-214ENST00000580003 CRYZL1O95825 349 aa0.35□□□□□ -2.35
SS18-214ENST00000580003 RPL5P46777 297 aaKnown RBP0.35□□□□□ -2.35
SS18-214ENST00000580003 SPRNQ5BIV9 151 aa0.35□□□□□ -2.35
SS18-214ENST00000580003 PPP1R2P1Q96PQ5 205 aa0.35□□□□□ -2.35
SS18-214ENST00000580003 OR51V1Q9H2C8 321 aa0.35□□□□□ -2.35
SS18-214ENST00000580003 NIT2Q9NQR4 276 aa0.35□□□□□ -2.35
SS18-214ENST00000580003 NUP155O75694 1391 aa0.34□□□□□ -2.35
SS18-214ENST00000580003 C6orf62Q9GZU0 229 aaPredicted RBP0.34□□□□□ -2.36
SS18-214ENST00000580003 SCN3AQ9NY46 2000 aa0.34□□□□□ -2.36
SS18-214ENST00000580003 TMEM14CQ9P0S9 112 aa0.34□□□□□ -2.36
SS18-214ENST00000580003 EPDR1Q9UM22 224 aa0.34□□□□□ -2.36
SS18-214ENST00000580003 V9GYY5 206 aaPredicted RBP0.34□□□□□ -2.36
SS18-214ENST00000580003 OR2T8A6NH00 312 aa0.33□□□□□ -2.36
SS18-214ENST00000580003 RPS20P60866 119 aaKnown RBP0.33□□□□□ -2.36
SS18-214ENST00000580003 YPEL3P61236 119 aaPredicted RBP0.33□□□□□ -2.36
SS18-214ENST00000580003 TPM4P67936 248 aa0.33□□□□□ -2.36
SS18-214ENST00000580003 LINC00301Q8NCQ3 95 aa0.33□□□□□ -2.36
SS18-214ENST00000580003 TSPAN32Q96QS1 320 aa0.33□□□□□ -2.36
SS18-214ENST00000580003 PKIGQ9Y2B9 76 aa0.33□□□□□ -2.36
SS18-214ENST00000580003 TGIF2-C20orf24A0A0A6YYL0 155 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms