RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 PUS1Q9Y606 427 aaKnown RBP eCLIP10.1□□□□□ -0.79
CCDC40-216ENST00000576241 DNAH10Q8IVF4 4471 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 GABARAPH6UMI1 98 aa10.09□□□□□ -0.79
CCDC40-216ENST00000576241 LY6G6CO95867 125 aa10.09□□□□□ -0.79
CCDC40-216ENST00000576241 CD74P04233 296 aa10.09□□□□□ -0.79
CCDC40-216ENST00000576241 SMIM18P0DKX4 95 aa10.09□□□□□ -0.79
CCDC40-216ENST00000576241 UCP1P25874 307 aa10.09□□□□□ -0.79
CCDC40-216ENST00000576241 OPRK1P41145 380 aa10.09□□□□□ -0.79
CCDC40-216ENST00000576241 ETV6P41212 452 aa10.09□□□□□ -0.79
CCDC40-216ENST00000576241 MRPS10P82664 201 aaKnown RBP10.09□□□□□ -0.79
CCDC40-216ENST00000576241 ZNF124Q15973 351 aa10.09□□□□□ -0.79
CCDC40-216ENST00000576241 MARCH1Q8TCQ1 289 aa10.09□□□□□ -0.79
CCDC40-216ENST00000576241 ST8SIA2Q92186 375 aa10.09□□□□□ -0.79
CCDC40-216ENST00000576241 C14orf166Q9Y224 244 aaKnown RBP10.09□□□□□ -0.79
CCDC40-216ENST00000576241 IGHV3-66A0A0C4DH42 116 aa10.08□□□□□ -0.8
CCDC40-216ENST00000576241 TEX13DA0A0J9YY54 714 aaPredicted RBP10.08□□□□□ -0.8
CCDC40-216ENST00000576241 TMEM50AO95807 157 aa10.08□□□□□ -0.8
CCDC40-216ENST00000576241 RNASE2P10153 161 aaKnown RBP10.08□□□□□ -0.8
CCDC40-216ENST00000576241 NPPCP23582 126 aa10.08□□□□□ -0.8
CCDC40-216ENST00000576241 SSBP1Q04837 148 aaKnown RBP10.08□□□□□ -0.8
CCDC40-216ENST00000576241 MEF2DQ14814 521 aa10.08□□□□□ -0.8
CCDC40-216ENST00000576241 PVRIGQ6DKI7 326 aa10.08□□□□□ -0.8
CCDC40-216ENST00000576241 FAM219AQ8IW50 185 aa10.08□□□□□ -0.8
CCDC40-216ENST00000576241 MS4A6AQ9H2W1 248 aa10.08□□□□□ -0.8
CCDC40-216ENST00000576241 VSIRQ9H7M9 311 aa10.08□□□□□ -0.8
CCDC40-216ENST00000576241 ZFAND3Q9H8U3 227 aa10.08□□□□□ -0.8
CCDC40-216ENST00000576241 TRAV2A0A0B4J234 112 aa10.07□□□□□ -0.8
CCDC40-216ENST00000576241 A0A1B0GU03 582 aa10.07□□□□□ -0.8
CCDC40-216ENST00000576241 A0A1W2PS18 150 aa10.07□□□□□ -0.8
CCDC40-216ENST00000576241 CLN5O75503 358 aa10.07□□□□□ -0.8
CCDC40-216ENST00000576241 DFFBO76075 338 aa10.07□□□□□ -0.8
CCDC40-216ENST00000576241 APOHP02749 345 aaPredicted RBP10.07□□□□□ -0.8
CCDC40-216ENST00000576241 RPL5P46777 297 aaKnown RBP10.07□□□□□ -0.8
CCDC40-216ENST00000576241 SPCS3P61009 180 aa10.07□□□□□ -0.8
CCDC40-216ENST00000576241 GPR141Q7Z602 305 aa10.07□□□□□ -0.8
CCDC40-216ENST00000576241 NARS2Q96I59 477 aaKnown RBP10.07□□□□□ -0.8
CCDC40-216ENST00000576241 METTL26Q96S19 204 aa10.07□□□□□ -0.8
CCDC40-216ENST00000576241 RARRES2Q99969 163 aa10.07□□□□□ -0.8
CCDC40-216ENST00000576241 TMEM222Q9H0R3 208 aa10.07□□□□□ -0.8
CCDC40-216ENST00000576241 RABAC1Q9UI14 185 aa10.07□□□□□ -0.8
CCDC40-216ENST00000576241 KMT2AQ03164 3969 aa10.07□□□□□ -0.8
CCDC40-216ENST00000576241 A0A0G2JRQ6 117 aa10.06□□□□□ -0.8
CCDC40-216ENST00000576241 RPS10-NUDT3A0A1W2PQS6 291 aa10.06□□□□□ -0.8
CCDC40-216ENST00000576241 DISC1C4P0D8 188 aa10.06□□□□□ -0.8
CCDC40-216ENST00000576241 CA1P00915 261 aaPredicted RBP10.06□□□□□ -0.8
CCDC40-216ENST00000576241 OR5AC1P0C628 307 aa10.06□□□□□ -0.8
CCDC40-216ENST00000576241 HTR2BP41595 481 aa10.06□□□□□ -0.8
CCDC40-216ENST00000576241 DEFB131AP59861 70 aa10.06□□□□□ -0.8
CCDC40-216ENST00000576241 SURF2Q15527 256 aaPredicted RBP10.06□□□□□ -0.8
CCDC40-216ENST00000576241 FAAP20Q6NZ36 180 aa10.06□□□□□ -0.8
CCDC40-216ENST00000576241 OR4X1Q8NH49 305 aa10.06□□□□□ -0.8
CCDC40-216ENST00000576241 RBPMSQ93062 196 aaKnown RBP10.06□□□□□ -0.8
CCDC40-216ENST00000576241 TMEM230Q96A57 120 aa10.06□□□□□ -0.8
CCDC40-216ENST00000576241 MRPS26Q9BYN8 205 aaKnown RBP10.06□□□□□ -0.8
CCDC40-216ENST00000576241 MIXL1Q9H2W2 232 aa10.06□□□□□ -0.8
CCDC40-216ENST00000576241 FNDC4Q9H6D8 234 aaPredicted RBP10.06□□□□□ -0.8
CCDC40-216ENST00000576241 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.06□□□□□ -0.8
CCDC40-216ENST00000576241 TRAV30A0A087WSZ9 112 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 CDS2O95674 445 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 AKAIN1P0CW23 69 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 DHODHQ02127 395 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 BSXQ3C1V8 233 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 AARDQ4LEZ3 155 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 LEMD1Q68G75 181 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 STHQ8IWL8 128 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 LILRB2Q8N423 598 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 OR11H2Q8NH07 326 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 OR52E5Q8NH55 327 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 PHLDA1Q8WV24 401 aaPredicted RBP10.05□□□□□ -0.8
CCDC40-216ENST00000576241 SMIM4Q8WVI0 70 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 MFFQ9GZY8 342 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 NAA60Q9H7X0 242 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 HEYLQ9NQ87 328 aaPredicted RBP10.05□□□□□ -0.8
CCDC40-216ENST00000576241 MUC4Q99102 2169 aa10.05□□□□□ -0.8
CCDC40-216ENST00000576241 CEBPZOSA8MTT3 80 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 CTDSP2O14595 271 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 CRYBB3P26998 211 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 EIF2B2P49770 351 aaKnown RBP10.04□□□□□ -0.8
CCDC40-216ENST00000576241 IL18Q14116 193 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 TMEM187Q14656 261 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 SPCS2Q15005 226 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 MLANAQ16655 118 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 TMEM268Q5VZI3 342 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 Q6ZRM9 215 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 RPP25LQ8N5L8 163 aaKnown RBP10.04□□□□□ -0.8
CCDC40-216ENST00000576241 STXBP6Q8NFX7 210 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 GLYATL2Q8WU03 294 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 GRAMD2BQ96HH9 432 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 PRRT1Q99946 306 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 RTBDNQ9BSG5 229 aaPredicted RBP10.04□□□□□ -0.8
CCDC40-216ENST00000576241 C11orf68Q9H3H3 251 aaKnown RBP10.04□□□□□ -0.8
CCDC40-216ENST00000576241 MRPL36Q9P0J6 103 aaKnown RBP10.04□□□□□ -0.8
CCDC40-216ENST00000576241 RABL2AQ9UBK7 228 aaPredicted RBP10.04□□□□□ -0.8
CCDC40-216ENST00000576241 CACNG5Q9UF02 275 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 CACFD1Q9UGQ2 172 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 RABL2BQ9UNT1 228 aa10.04□□□□□ -0.8
CCDC40-216ENST00000576241 CRYM-AS1A6NIL9 109 aa10.03□□□□□ -0.8
CCDC40-216ENST00000576241 SLC25A4P12235 298 aa10.03□□□□□ -0.8
CCDC40-216ENST00000576241 P2RY1P47900 373 aa10.03□□□□□ -0.8
CCDC40-216ENST00000576241 TIGITQ495A1 244 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms