RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RPRMQ9NS64 109 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 MOB4Q9Y3A3 225 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 OTOGQ6ZRI0 2925 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 A0A096LNT2 108 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 TMEM218A2RU14 115 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 SEC14L6B5MCN3 397 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 TEX22C9J3V5 150 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 AGPAT2O15120 278 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 CTRB1P17538 263 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 NPBWR1P48145 328 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 DLX1P56177 255 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 B2MP61769 119 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 CX3CL1P78423 397 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 GAMTQ14353 236 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 GUK1Q16774 197 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 MRGPRG-AS1Q2M3A8 158 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 KLK9Q2XQG4 91 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 AKIRIN2Q53H80 203 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 KHDC3LQ587J8 217 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 CTRB2Q6GPI1 263 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 C9orf139Q6ZV77 190 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 THAP8Q8NA92 274 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 TMEM116Q8NCL8 245 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 STXBP6Q8NFX7 210 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 OR10W1Q8NGF6 305 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 GATAD1Q8WUU5 269 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 TMEM170AQ8WVE7 144 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 SSMEM1Q8WWF3 244 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 TXN2Q99757 166 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 RSG1Q9BU20 258 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 GGTLC1Q9BX51 225 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 SEC11CQ9BY50 192 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 EIF5A2Q9GZV4 153 aaKnown RBP6.34□□□□□ -1.39
VPS39-213ENST00000570062 TREM1Q9NP99 234 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 MANBALQ9NQG1 85 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 KLK9Q9UKQ9 250 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 PXMP4Q9Y6I8 212 aa6.34□□□□□ -1.39
VPS39-213ENST00000570062 TRAV40A0A0B4J280 105 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 CGB1A6NKQ9 187 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 EREGO14944 169 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 BRI3O95415 125 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 HSPB1P04792 205 aaKnown RBP6.33□□□□□ -1.4
VPS39-213ENST00000570062 CD5P06127 495 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 CDC34P49427 236 aaPredicted RBP6.33□□□□□ -1.4
VPS39-213ENST00000570062 FAM209BQ5JX69 171 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 SLC35E3Q7Z769 313 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 SVBPQ8N300 66 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 Q8N9W7 124 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 OR4X1Q8NH49 305 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 SGMS2Q8NHU3 365 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 PCNPQ8WW12 178 aaKnown RBP6.33□□□□□ -1.4
VPS39-213ENST00000570062 RCC1LQ96I51 464 aaKnown RBP6.33□□□□□ -1.4
VPS39-213ENST00000570062 NARS2Q96I59 477 aaKnown RBP6.33□□□□□ -1.4
VPS39-213ENST00000570062 ZNF48Q96MX3 618 aaPredicted RBP6.33□□□□□ -1.4
VPS39-213ENST00000570062 TRGV9Q99603 122 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 MRPL32Q9BYC8 188 aaKnown RBP6.33□□□□□ -1.4
VPS39-213ENST00000570062 WNT10AQ9GZT5 417 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 ZNF580Q9UK33 172 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 SLC45A2Q9UMX9 530 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 ARL2-SNX15V9GYD0 113 aa6.33□□□□□ -1.4
VPS39-213ENST00000570062 F8P00451 2351 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 CELSR1Q9NYQ6 3014 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 TCRBV4S1A1TA0A5B7 111 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 MAP1LC3B2A6NCE7 125 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 RBFOX3A6NFN3 312 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 ZFP92A6NM28 416 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 E7EUB6 86 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 H3BUA1 57 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 FCN1O00602 326 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 EIF4EBP3O60516 100 aaPredicted RBP6.32□□□□□ -1.4
VPS39-213ENST00000570062 CXorf1O96002 111 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 IGHV4-31P0DP07 118 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 MYOD1P15172 320 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 CNTFRP26992 372 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 FCGR2BP31994 310 aaPredicted RBP6.32□□□□□ -1.4
VPS39-213ENST00000570062 CRIP2P52943 208 aaPredicted RBP6.32□□□□□ -1.4
VPS39-213ENST00000570062 MFAP4P55083 255 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 ELLP55199 621 aaPredicted RBP6.32□□□□□ -1.4
VPS39-213ENST00000570062 PRB3Q04118 309 aaPredicted RBP6.32□□□□□ -1.4
VPS39-213ENST00000570062 TOR2AQ5JU69 321 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 CYP2G1PQ6ZSU1 146 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 CCDC28AQ8IWP9 274 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 DYNAPQ8N1N2 210 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 RPP25LQ8N5L8 163 aaKnown RBP6.32□□□□□ -1.4
VPS39-213ENST00000570062 STPG3Q8N7X2 389 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 BPIFCQ8NFQ6 507 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 FAM110DQ8TAY7 271 aaPredicted RBP6.32□□□□□ -1.4
VPS39-213ENST00000570062 VN1R17PQ8TDU5 208 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 NRGNQ92686 78 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 MISP3Q96FF7 219 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 Q96MF0 132 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 MGST2Q99735 147 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 SSX3Q99909 188 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 SLC25A33Q9BSK2 321 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 NKX6-2Q9C056 277 aaPredicted RBP6.32□□□□□ -1.4
VPS39-213ENST00000570062 MAP1LC3BQ9GZQ8 125 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 SLC35B3Q9H1N7 401 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 TMEM167BQ9NRX6 74 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 VAX2Q9UIW0 290 aa6.32□□□□□ -1.4
VPS39-213ENST00000570062 USF3Q68DE3 2245 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms