RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 C15orf32Q32M92 178 aa6.56□□□□□ -1.36
SF3B3-212ENST00000568539 CDPF1Q6NVV7 123 aa6.56□□□□□ -1.36
SF3B3-212ENST00000568539 ETV3LQ6ZN32 361 aa6.56□□□□□ -1.36
SF3B3-212ENST00000568539 TCTE3Q8IZS6 198 aa6.56□□□□□ -1.36
SF3B3-212ENST00000568539 TMEM252Q8N6L7 170 aa6.56□□□□□ -1.36
SF3B3-212ENST00000568539 ZNF491Q8N8L2 437 aa6.56□□□□□ -1.36
SF3B3-212ENST00000568539 C11orf44Q8N8P7 122 aa6.56□□□□□ -1.36
SF3B3-212ENST00000568539 DCUN1D4Q92564 292 aa6.56□□□□□ -1.36
SF3B3-212ENST00000568539 PINX1Q96BK5 328 aaKnown RBP6.56□□□□□ -1.36
SF3B3-212ENST00000568539 MISP3Q96FF7 219 aa6.56□□□□□ -1.36
SF3B3-212ENST00000568539 USMG5Q96IX5 58 aa6.56□□□□□ -1.36
SF3B3-212ENST00000568539 CITED2Q99967 270 aaPredicted RBP6.56□□□□□ -1.36
SF3B3-212ENST00000568539 NEURL2Q9BR09 285 aa6.56□□□□□ -1.36
SF3B3-212ENST00000568539 FNDC4Q9H6D8 234 aaPredicted RBP6.56□□□□□ -1.36
SF3B3-212ENST00000568539 PAIP2BQ9ULR5 123 aaKnown RBP6.56□□□□□ -1.36
SF3B3-212ENST00000568539 A0A0G2JLM5 398 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 MFSD2BA6NFX1 497 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 METTL15P1P0C7V9 234 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 OPRK1P41145 380 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 CDX1P47902 265 aaPredicted RBP6.55□□□□□ -1.36
SF3B3-212ENST00000568539 SULT1A1P50225 295 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 EWSR1Q01844 656 aaKnown RBP eCLIP6.55□□□□□ -1.36
SF3B3-212ENST00000568539 ATP5G2Q06055 141 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 CD69Q07108 199 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 CD300CQ08708 224 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 ARL16Q0P5N6 197 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 EXOSC2Q13868 293 aaKnown RBP6.55□□□□□ -1.36
SF3B3-212ENST00000568539 MLANAQ16655 118 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 HIST2H2BDQ6DRA6 164 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 HAPLN4Q86UW8 402 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 VN1R17PQ8TDU5 208 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 SCARB1Q8WTV0 552 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 CXorf58Q96LI9 332 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 UBE2E2Q96LR5 201 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 CITED1Q99966 193 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 GNB4Q9HAV0 340 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 S4R3C0 116 aa6.55□□□□□ -1.36
SF3B3-212ENST00000568539 FXYD6-FXYD2A0A087WZ82 144 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 IGHV3-21A0A0B4J1V1 117 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 RPS10-NUDT3A0A1W2PQS6 291 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 TCRBV4S1A1TA0A5B7 111 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 CST7O76096 145 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 SCAF4O95104 1147 aaKnown RBP6.54□□□□□ -1.36
SF3B3-212ENST00000568539 IGHV3-11P01762 117 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 IGHV3-48P01763 117 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 LGALS1P09382 135 aaKnown RBP6.54□□□□□ -1.36
SF3B3-212ENST00000568539 RPL12P30050 165 aaKnown RBP6.54□□□□□ -1.36
SF3B3-212ENST00000568539 GPX4P36969 197 aaPredicted RBP6.54□□□□□ -1.36
SF3B3-212ENST00000568539 BAXQ07812 192 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 ANKRD39Q53RE8 183 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 OR8G2PQ6IF36 304 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 ETFRF1Q6IPR1 90 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 ZNF343Q6P1L6 599 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 C18orf65Q6ZTR6 163 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 SLC16A13Q7RTY0 426 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 ZNF546Q86UE3 836 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 STX12Q86Y82 276 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 OR11H4Q8NGC9 324 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 OR10P1Q8NGE3 313 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 ZNF502Q8TBZ5 544 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 CACNG8Q8WXS5 425 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 EEF1AKMT3Q96AZ1 226 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 CCDC140Q96MF4 163 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 AQP10Q96PS8 301 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 ZNF747Q9BV97 191 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 SSBP4Q9BWG4 385 aaPredicted RBP6.54□□□□□ -1.36
SF3B3-212ENST00000568539 SLC25A31Q9H0C2 315 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 C21orf62Q9NYP8 219 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 MRPL36Q9P0J6 103 aaKnown RBP6.54□□□□□ -1.36
SF3B3-212ENST00000568539 TNFSF18Q9UNG2 199 aa6.54□□□□□ -1.36
SF3B3-212ENST00000568539 TSSC4Q9Y5U2 329 aaPredicted RBP6.54□□□□□ -1.36
SF3B3-212ENST00000568539 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.53□□□□□ -1.36
SF3B3-212ENST00000568539 TRBV7-1A0A0A6YYK4 115 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 RNF222A6NCQ9 220 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 I3L521 148 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 IGHV3-23P01764 117 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 C1QBP02746 253 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 FCGR2BP31994 310 aaPredicted RBP6.53□□□□□ -1.36
SF3B3-212ENST00000568539 MFAP4P55083 255 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 RUNX1Q01196 453 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 NHLH2Q02577 135 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 GAMTQ14353 236 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 KHDC1LQ5JSQ8 128 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 C12orf54Q6X4T0 127 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 ACOT7LQ6ZUV0 252 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 NDUFA11Q86Y39 141 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 TMEM217Q8N7C4 229 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 TMEM116Q8NCL8 245 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 OR4X1Q8NH49 305 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 C4orf3Q8WVX3 66 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 BSCL2Q96G97 398 aaPredicted RBP6.53□□□□□ -1.36
SF3B3-212ENST00000568539 OR5B12Q96R08 314 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 ATP6V0BQ99437 205 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 TXN2Q99757 166 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 HSPB11Q9Y547 144 aa6.53□□□□□ -1.36
SF3B3-212ENST00000568539 A0A1W2PRX2 142 aa6.52□□□□□ -1.37
SF3B3-212ENST00000568539 ANKRD34BA5PLL1 514 aa6.52□□□□□ -1.37
SF3B3-212ENST00000568539 HMSDA8MTL9 139 aa6.52□□□□□ -1.37
SF3B3-212ENST00000568539 FNDC10F2Z333 226 aa6.52□□□□□ -1.37
SF3B3-212ENST00000568539 ARPC5O15511 151 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms