RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	COPZ2	Q9P299	210 aa		12.33	□□□□□ -0.44
CLN3-231	ENST00000568422	MTFP1	Q9UDX5	166 aa		12.33	□□□□□ -0.44
CLN3-231	ENST00000568422		A0A1B0GU03	582 aa		12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	CLN5	O75503	358 aa		12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	RNASE2	P10153	161 aa	Known RBP	12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	OPRK1	P41145	380 aa		12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	HOXA1	P49639	335 aa	Predicted RBP	12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	NANOS2	P60321	138 aa	Known RBP	12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	TRIM16L	Q309B1	348 aa		12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	RPP25L	Q8N5L8	163 aa	Known RBP	12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	OR4X1	Q8NH49	305 aa		12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	TERB2	Q8NHR7	220 aa		12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	GRAMD2B	Q96HH9	432 aa		12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	NARS2	Q96I59	477 aa	Known RBP	12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	METTL26	Q96S19	204 aa		12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	FBXL17	Q9UF56	701 aa		12.32	□□□□□ -0.44
CLN3-231	ENST00000568422	TRAV30	A0A087WSZ9	112 aa		12.31	□□□□□ -0.44
CLN3-231	ENST00000568422	IGHV3-66	A0A0C4DH42	116 aa		12.31	□□□□□ -0.44
CLN3-231	ENST00000568422	UCP1	P25874	307 aa		12.31	□□□□□ -0.44
CLN3-231	ENST00000568422	CRYBB3	P26998	211 aa		12.31	□□□□□ -0.44
CLN3-231	ENST00000568422	ETV6	P41212	452 aa		12.31	□□□□□ -0.44
CLN3-231	ENST00000568422	BSX	Q3C1V8	233 aa		12.31	□□□□□ -0.44
CLN3-231	ENST00000568422	LEMD1	Q68G75	181 aa		12.31	□□□□□ -0.44
CLN3-231	ENST00000568422	FAM219A	Q8IW50	185 aa		12.31	□□□□□ -0.44
CLN3-231	ENST00000568422	OR52I2	Q8NH67	350 aa		12.31	□□□□□ -0.44
CLN3-231	ENST00000568422	C2CD4C	Q8TF44	421 aa		12.31	□□□□□ -0.44
CLN3-231	ENST00000568422	RABAC1	Q9UI14	185 aa		12.31	□□□□□ -0.44
CLN3-231	ENST00000568422	CD74	P04233	296 aa		12.3	□□□□□ -0.44
CLN3-231	ENST00000568422	SPP1	P10451	314 aa		12.3	□□□□□ -0.44
CLN3-231	ENST00000568422	ZNF182	P17025	639 aa	Predicted RBP	12.3	□□□□□ -0.44
CLN3-231	ENST00000568422	HTR2B	P41595	481 aa		12.3	□□□□□ -0.44
CLN3-231	ENST00000568422	SPCS3	P61009	180 aa		12.3	□□□□□ -0.44
CLN3-231	ENST00000568422	MORN3	Q6PF18	240 aa	Predicted RBP	12.3	□□□□□ -0.44
CLN3-231	ENST00000568422	TMEM229B	Q8NBD8	167 aa		12.3	□□□□□ -0.44
CLN3-231	ENST00000568422	RNASE11	Q8TAA1	199 aa	Known RBP	12.3	□□□□□ -0.44
CLN3-231	ENST00000568422	TMEM230	Q96A57	120 aa		12.3	□□□□□ -0.44
CLN3-231	ENST00000568422	HRH4	Q9H3N8	390 aa		12.3	□□□□□ -0.44
CLN3-231	ENST00000568422	FNDC4	Q9H6D8	234 aa	Predicted RBP	12.3	□□□□□ -0.44
CLN3-231	ENST00000568422	EXTL2	Q9UBQ6	330 aa		12.3	□□□□□ -0.44
CLN3-231	ENST00000568422	RPS10-NUDT3	A0A1W2PQS6	291 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	C11orf94	C9JXX5	98 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422		K7EQG2	157 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	P2RY1	P47900	373 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	EIF2B2	P49770	351 aa	Known RBP	12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	PPP5C	P53041	499 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	TAS2R19	P59542	299 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	SP6	Q3SY56	376 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	SCGB2B2	Q4G0G5	96 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	AARD	Q4LEZ3	155 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	RNASE12	Q5GAN4	147 aa	Known RBP	12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	FAM24B	Q8N5W8	94 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	STXBP6	Q8NFX7	210 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	OR13C8	Q8NGS7	320 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	OR52E5	Q8NH55	327 aa		12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	12.29	□□□□□ -0.44
CLN3-231	ENST00000568422	DEDD	O75618	318 aa		12.28	□□□□□ -0.44
CLN3-231	ENST00000568422	CDS2	O95674	445 aa		12.28	□□□□□ -0.44
CLN3-231	ENST00000568422	RAB3D	O95716	219 aa		12.28	□□□□□ -0.44
CLN3-231	ENST00000568422	SSBP1	Q04837	148 aa	Known RBP	12.28	□□□□□ -0.44
CLN3-231	ENST00000568422	TRPT1	Q86TN4	253 aa	Known RBP	12.28	□□□□□ -0.44
CLN3-231	ENST00000568422	ABHD1	Q96SE0	405 aa		12.28	□□□□□ -0.44
CLN3-231	ENST00000568422	TMEM222	Q9H0R3	208 aa		12.28	□□□□□ -0.44
CLN3-231	ENST00000568422	MRPL36	Q9P0J6	103 aa	Known RBP	12.28	□□□□□ -0.44
CLN3-231	ENST00000568422	CACFD1	Q9UGQ2	172 aa		12.28	□□□□□ -0.44
CLN3-231	ENST00000568422	AGRN	O00468	2067 aa		12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	DEFB4A	O15263	64 aa		12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	GABARAP	O95166	117 aa		12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	IGKV1-17	P01599	117 aa		12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	MIF	P14174	115 aa		12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	AP2S1	P53680	142 aa	Predicted RBP	12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	MRPS10	P82664	201 aa	Known RBP	12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	MEF2D	Q14814	521 aa		12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	CTF1	Q16619	201 aa		12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	MLANA	Q16655	118 aa		12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	STEAP1B	Q6NZ63	245 aa		12.27	□□□□□ -0.45
CLN3-231	ENST00000568422		Q8NAQ8	132 aa		12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	OR4D10	Q8NGI6	311 aa		12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	MARCH1	Q8TCQ1	289 aa		12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	RNASEH2C	Q8TDP1	164 aa	Known RBP	12.27	□□□□□ -0.45
CLN3-231	ENST00000568422	C14orf166	Q9Y224	244 aa	Known RBP	12.27	□□□□□ -0.45
CLN3-231	ENST00000568422		A0A0G2JRQ6	117 aa		12.26	□□□□□ -0.45
CLN3-231	ENST00000568422	HELT	A6NFD8	242 aa		12.26	□□□□□ -0.45
CLN3-231	ENST00000568422	GABARAP	H6UMI1	98 aa		12.26	□□□□□ -0.45
CLN3-231	ENST00000568422	SLC25A4	P12235	298 aa		12.26	□□□□□ -0.45
CLN3-231	ENST00000568422	DHODH	Q02127	395 aa		12.26	□□□□□ -0.45
CLN3-231	ENST00000568422	SURF2	Q15527	256 aa	Predicted RBP	12.26	□□□□□ -0.45
CLN3-231	ENST00000568422		Q6ZRM9	215 aa		12.26	□□□□□ -0.45
CLN3-231	ENST00000568422	OR1S2	Q8NGQ3	325 aa		12.26	□□□□□ -0.45
CLN3-231	ENST00000568422	DCANP1	Q8TF63	244 aa		12.26	□□□□□ -0.45
CLN3-231	ENST00000568422		Q8WTZ3	238 aa		12.26	□□□□□ -0.45
CLN3-231	ENST00000568422	RBPMS	Q93062	196 aa	Known RBP	12.26	□□□□□ -0.45
CLN3-231	ENST00000568422		U3KQE9	123 aa		12.26	□□□□□ -0.45
CLN3-231	ENST00000568422	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	12.25	□□□□□ -0.45
CLN3-231	ENST00000568422	ZNF705E	A8MWA4	302 aa	Predicted RBP	12.25	□□□□□ -0.45
CLN3-231	ENST00000568422	GIG44	P09565	113 aa	Predicted RBP	12.25	□□□□□ -0.45
CLN3-231	ENST00000568422	OR5AC1	P0C628	307 aa		12.25	□□□□□ -0.45
CLN3-231	ENST00000568422	ZNF688	P0C7X2	276 aa		12.25	□□□□□ -0.45
CLN3-231	ENST00000568422	YPEL3	P61236	119 aa	Predicted RBP	12.25	□□□□□ -0.45
CLN3-231	ENST00000568422	TIGIT	Q495A1	244 aa		12.25	□□□□□ -0.45
CLN3-231	ENST00000568422	C2orf83	Q53S99	150 aa		12.25	□□□□□ -0.45

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms