RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 SRD5A3Q9H8P0 318 aa14.03□□□□□ -0.16
CLN3-227ENST00000567495 SHPKQ9UHJ6 478 aa14.03□□□□□ -0.16
CLN3-227ENST00000567495 RPS10-NUDT3A0A1W2PQS6 291 aa14.02□□□□□ -0.17
CLN3-227ENST00000567495 IGHV3-48P01763 117 aa14.02□□□□□ -0.17
CLN3-227ENST00000567495 TMEM128Q5BJH2 165 aa14.02□□□□□ -0.17
CLN3-227ENST00000567495 HEYLQ9NQ87 328 aaPredicted RBP14.02□□□□□ -0.17
CLN3-227ENST00000567495 SMPXQ9UHP9 88 aa14.02□□□□□ -0.17
CLN3-227ENST00000567495 TRAV14DV4A0A0A6YYC5 116 aa14.01□□□□□ -0.17
CLN3-227ENST00000567495 CEBPZOSA8MTT3 80 aa14.01□□□□□ -0.17
CLN3-227ENST00000567495 CD5P06127 495 aa14.01□□□□□ -0.17
CLN3-227ENST00000567495 OPRK1P41145 380 aa14.01□□□□□ -0.17
CLN3-227ENST00000567495 CCR6P51684 374 aa14.01□□□□□ -0.17
CLN3-227ENST00000567495 SUPT4H1P63272 117 aaKnown RBP14.01□□□□□ -0.17
CLN3-227ENST00000567495 NMSQ5H8A3 153 aa14.01□□□□□ -0.17
CLN3-227ENST00000567495 TMEM116Q8NCL8 245 aa14.01□□□□□ -0.17
CLN3-227ENST00000567495 OR4X1Q8NH49 305 aa14.01□□□□□ -0.17
CLN3-227ENST00000567495 RNASEH2CQ8TDP1 164 aaKnown RBP14.01□□□□□ -0.17
CLN3-227ENST00000567495 HIPK2Q9H2X6 1198 aa14.01□□□□□ -0.17
CLN3-227ENST00000567495 NDUFA13Q9P0J0 144 aa14.01□□□□□ -0.17
CLN3-227ENST00000567495 SELENOKQ9Y6D0 94 aa14.01□□□□□ -0.17
CLN3-227ENST00000567495 IGHV3OR16-8A0A075B7F1 116 aa14□□□□□ -0.17
CLN3-227ENST00000567495 IGHV7-4-1A0A0J9YVY3 117 aa14□□□□□ -0.17
CLN3-227ENST00000567495 RBMY1BA6NDE4 496 aaKnown RBP14□□□□□ -0.17
CLN3-227ENST00000567495 RBMY1EA6NEQ0 496 aaKnown RBP14□□□□□ -0.17
CLN3-227ENST00000567495 OR4C46A6NHA9 309 aa14□□□□□ -0.17
CLN3-227ENST00000567495 TMEM50AO95807 157 aa14□□□□□ -0.17
CLN3-227ENST00000567495 RBMY1DP0C7P1 496 aaKnown RBP14□□□□□ -0.17
CLN3-227ENST00000567495 C2orf83Q53S99 150 aa14□□□□□ -0.17
CLN3-227ENST00000567495 ZNF600Q6ZNG1 722 aa14□□□□□ -0.17
CLN3-227ENST00000567495 MUC7Q8TAX7 377 aa14□□□□□ -0.17
CLN3-227ENST00000567495 FAM110AQ9BQ89 295 aa14□□□□□ -0.17
CLN3-227ENST00000567495 RHPN1-AS1Q9BWJ2 59 aa14□□□□□ -0.17
CLN3-227ENST00000567495 TRAV30A0A087WSZ9 112 aa13.99□□□□□ -0.17
CLN3-227ENST00000567495 A0A1B0GU03 582 aa13.99□□□□□ -0.17
CLN3-227ENST00000567495 DUXBA0A1W2PPF3 345 aa13.99□□□□□ -0.17
CLN3-227ENST00000567495 ZNF207O43670 478 aaKnown RBP13.99□□□□□ -0.17
CLN3-227ENST00000567495 CLN5O75503 358 aa13.99□□□□□ -0.17
CLN3-227ENST00000567495 SLC25A4P12235 298 aa13.99□□□□□ -0.17
CLN3-227ENST00000567495 SMCO1Q147U7 214 aa13.99□□□□□ -0.17
CLN3-227ENST00000567495 TOMM20LQ6UXN7 152 aa13.99□□□□□ -0.17
CLN3-227ENST00000567495 TMED4Q7Z7H5 227 aa13.99□□□□□ -0.17
CLN3-227ENST00000567495 SLC24A4Q8NFF2 622 aa13.99□□□□□ -0.17
CLN3-227ENST00000567495 FNDC4Q9H6D8 234 aaPredicted RBP13.99□□□□□ -0.17
CLN3-227ENST00000567495 HUWE1Q7Z6Z7 4374 aaKnown RBP13.98□□□□□ -0.17
CLN3-227ENST00000567495 CHEK1O14757 476 aa13.98□□□□□ -0.17
CLN3-227ENST00000567495 INPP1P49441 399 aa13.98□□□□□ -0.17
CLN3-227ENST00000567495 CMC4P56277 68 aaPredicted RBP13.98□□□□□ -0.17
CLN3-227ENST00000567495 ATP5IP56385 69 aaPredicted RBP13.98□□□□□ -0.17
CLN3-227ENST00000567495 TNFRSF9Q07011 255 aa13.98□□□□□ -0.17
CLN3-227ENST00000567495 ETFRF1Q6IPR1 90 aa13.98□□□□□ -0.17
CLN3-227ENST00000567495 ZNF414Q96IQ9 312 aa13.98□□□□□ -0.17
CLN3-227ENST00000567495 SRRQ9GZT4 340 aa13.98□□□□□ -0.17
CLN3-227ENST00000567495 WFDC10AQ9H1F0 79 aa13.98□□□□□ -0.17
CLN3-227ENST00000567495 U3KQ87 197 aa13.98□□□□□ -0.17
CLN3-227ENST00000567495 LYZL2Q7Z4W2 148 aa13.97□□□□□ -0.17
CLN3-227ENST00000567495 GGTLC1Q9BX51 225 aa13.97□□□□□ -0.17
CLN3-227ENST00000567495 TMEM231Q9H6L2 316 aa13.97□□□□□ -0.17
CLN3-227ENST00000567495 HSPB7Q9UBY9 170 aa13.97□□□□□ -0.17
CLN3-227ENST00000567495 PUS1Q9Y606 427 aaKnown RBP eCLIP13.97□□□□□ -0.17
CLN3-227ENST00000567495 LOC102724200A0A096LPH7 203 aaPredicted RBP13.96□□□□□ -0.17
CLN3-227ENST00000567495 NAP1L6A6NFF2 107 aa13.96□□□□□ -0.17
CLN3-227ENST00000567495 VAMP1P23763 118 aa13.96□□□□□ -0.17
CLN3-227ENST00000567495 NPY1RP25929 384 aa13.96□□□□□ -0.17
CLN3-227ENST00000567495 UBE2MP61081 183 aaKnown RBP13.96□□□□□ -0.17
CLN3-227ENST00000567495 RBMS2Q15434 407 aaKnown RBP13.96□□□□□ -0.17
CLN3-227ENST00000567495 TRIQKQ629K1 86 aa13.96□□□□□ -0.17
CLN3-227ENST00000567495 LRTM2Q8N967 370 aa13.96□□□□□ -0.17
CLN3-227ENST00000567495 RNF2Q99496 336 aa13.96□□□□□ -0.17
CLN3-227ENST00000567495 PRR13Q9NZ81 148 aa13.96□□□□□ -0.17
CLN3-227ENST00000567495 A0A1W2PS18 150 aa13.95□□□□□ -0.18
CLN3-227ENST00000567495 SLC25A6P12236 298 aa13.95□□□□□ -0.18
CLN3-227ENST00000567495 LYL1P12980 280 aa13.95□□□□□ -0.18
CLN3-227ENST00000567495 NPPCP23582 126 aa13.95□□□□□ -0.18
CLN3-227ENST00000567495 PAFAH1B2P68402 229 aa13.95□□□□□ -0.18
CLN3-227ENST00000567495 CENPSQ8N2Z9 138 aa13.95□□□□□ -0.18
CLN3-227ENST00000567495 OR1S1Q8NH92 325 aa13.95□□□□□ -0.18
CLN3-227ENST00000567495 VSIRQ9H7M9 311 aa13.95□□□□□ -0.18
CLN3-227ENST00000567495 EDA2RQ9HAV5 297 aa13.95□□□□□ -0.18
CLN3-227ENST00000567495 NBEAL2Q6ZNJ1 2754 aa13.94□□□□□ -0.18
CLN3-227ENST00000567495 IFNA10P01566 189 aa13.94□□□□□ -0.18
CLN3-227ENST00000567495 IGKV1-17P01599 117 aa13.94□□□□□ -0.18
CLN3-227ENST00000567495 MLANAQ16655 118 aa13.94□□□□□ -0.18
CLN3-227ENST00000567495 PRSS54Q6PEW0 395 aa13.94□□□□□ -0.18
CLN3-227ENST00000567495 OR1S2Q8NGQ3 325 aa13.94□□□□□ -0.18
CLN3-227ENST00000567495 DTD1Q8TEA8 209 aa13.94□□□□□ -0.18
CLN3-227ENST00000567495 METTL26Q96S19 204 aa13.94□□□□□ -0.18
CLN3-227ENST00000567495 ZFAND3Q9H8U3 227 aa13.94□□□□□ -0.18
CLN3-227ENST00000567495 MRPL36Q9P0J6 103 aaKnown RBP13.94□□□□□ -0.18
CLN3-227ENST00000567495 TMED3Q9Y3Q3 217 aa13.94□□□□□ -0.18
CLN3-227ENST00000567495 SFT2D2O95562 160 aa13.93□□□□□ -0.18
CLN3-227ENST00000567495 RND2P52198 227 aa13.93□□□□□ -0.18
CLN3-227ENST00000567495 APOC4P55056 127 aa13.93□□□□□ -0.18
CLN3-227ENST00000567495 FAM90A2PQ658T7 463 aa13.93□□□□□ -0.18
CLN3-227ENST00000567495 NARS2Q96I59 477 aaKnown RBP13.93□□□□□ -0.18
CLN3-227ENST00000567495 IGHV3-49A0A0A0MS15 119 aa13.92□□□□□ -0.18
CLN3-227ENST00000567495 CENPXA8MT69 81 aa13.92□□□□□ -0.18
CLN3-227ENST00000567495 FAM90A26D6RGX4 464 aa13.92□□□□□ -0.18
CLN3-227ENST00000567495 UBE2CO00762 179 aa13.92□□□□□ -0.18
CLN3-227ENST00000567495 PITX3O75364 302 aa13.92□□□□□ -0.18
CLN3-227ENST00000567495 OR10J1P30954 320 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms