RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SIX6O95475 246 aa14.88□□□□□ -0.03
CLN3-225ENST00000566824 SCGB1D2O95969 90 aa14.88□□□□□ -0.03
CLN3-225ENST00000566824 FCGR2BP31994 310 aaPredicted RBP14.88□□□□□ -0.03
CLN3-225ENST00000566824 OPRK1P41145 380 aa14.88□□□□□ -0.03
CLN3-225ENST00000566824 NKX2-1P43699 371 aaPredicted RBP14.88□□□□□ -0.03
CLN3-225ENST00000566824 EGFEM1PQ0D2K5 195 aa14.88□□□□□ -0.03
CLN3-225ENST00000566824 SELENOKQ9Y6D0 94 aa14.88□□□□□ -0.03
CLN3-225ENST00000566824 U3KQ87 197 aa14.88□□□□□ -0.03
CLN3-225ENST00000566824 IGHV3OR16-8A0A075B7F1 116 aa14.87□□□□□ -0.03
CLN3-225ENST00000566824 SNRPGP15A8MWD9 76 aa14.87□□□□□ -0.03
CLN3-225ENST00000566824 H3BP45 60 aa14.87□□□□□ -0.03
CLN3-225ENST00000566824 PRAF2O60831 178 aa14.87□□□□□ -0.03
CLN3-225ENST00000566824 MED6O75586 246 aa14.87□□□□□ -0.03
CLN3-225ENST00000566824 PTTG1O95997 202 aa14.87□□□□□ -0.03
CLN3-225ENST00000566824 MBPP02686 304 aaPredicted RBP14.87□□□□□ -0.03
CLN3-225ENST00000566824 PAX9P55771 341 aa14.87□□□□□ -0.03
CLN3-225ENST00000566824 WDR89Q96FK6 387 aaPredicted RBP14.87□□□□□ -0.03
CLN3-225ENST00000566824 ZNF436Q9C0F3 470 aaPredicted RBP14.87□□□□□ -0.03
CLN3-225ENST00000566824 GPN1Q9HCN4 374 aaPredicted RBP14.87□□□□□ -0.03
CLN3-225ENST00000566824 RCL1Q9Y2P8 373 aaKnown RBP14.87□□□□□ -0.03
CLN3-225ENST00000566824 ZNF320A2RRD8 509 aa14.86□□□□□ -0.03
CLN3-225ENST00000566824 C5orf51A6NDU8 294 aa14.86□□□□□ -0.03
CLN3-225ENST00000566824 CORTO00230 105 aa14.86□□□□□ -0.03
CLN3-225ENST00000566824 SSSCA1O60232 199 aa14.86□□□□□ -0.03
CLN3-225ENST00000566824 PRSS54Q6PEW0 395 aa14.86□□□□□ -0.03
CLN3-225ENST00000566824 REC114Q7Z4M0 266 aa14.86□□□□□ -0.03
CLN3-225ENST00000566824 RNASEH2CQ8TDP1 164 aaKnown RBP14.86□□□□□ -0.03
CLN3-225ENST00000566824 CACNG8Q8WXS5 425 aa14.86□□□□□ -0.03
CLN3-225ENST00000566824 ATP6V0BQ99437 205 aa14.86□□□□□ -0.03
CLN3-225ENST00000566824 TXN2Q99757 166 aa14.86□□□□□ -0.03
CLN3-225ENST00000566824 PALMDQ9NP74 551 aa14.86□□□□□ -0.03
CLN3-225ENST00000566824 SORL1Q92673 2214 aa14.86□□□□□ -0.03
CLN3-225ENST00000566824 LGALS9O00182 355 aa14.85□□□□□ -0.03
CLN3-225ENST00000566824 GNG7O60262 68 aa14.85□□□□□ -0.03
CLN3-225ENST00000566824 IL15RAQ13261 267 aa14.85□□□□□ -0.03
CLN3-225ENST00000566824 DCTN2Q13561 401 aaKnown RBP14.85□□□□□ -0.03
CLN3-225ENST00000566824 TM4SF20Q53R12 229 aa14.85□□□□□ -0.03
CLN3-225ENST00000566824 SPSB3Q6PJ21 355 aa14.85□□□□□ -0.03
CLN3-225ENST00000566824 C2orf50Q96LR7 162 aa14.85□□□□□ -0.03
CLN3-225ENST00000566824 PAIP2BQ9ULR5 123 aaKnown RBP14.85□□□□□ -0.03
CLN3-225ENST00000566824 TMEM213A2RRL7 107 aa14.84□□□□□ -0.03
CLN3-225ENST00000566824 C2orf70A6NJV1 201 aa14.84□□□□□ -0.03
CLN3-225ENST00000566824 GOSR2O14653 212 aa14.84□□□□□ -0.03
CLN3-225ENST00000566824 IFNA4P05014 189 aa14.84□□□□□ -0.03
CLN3-225ENST00000566824 RND2P52198 227 aa14.84□□□□□ -0.03
CLN3-225ENST00000566824 TATDN3Q17R31 274 aa14.84□□□□□ -0.03
CLN3-225ENST00000566824 FAM106AQ4KMX7 169 aa14.84□□□□□ -0.03
CLN3-225ENST00000566824 SPANXN5Q5MJ07 72 aa14.84□□□□□ -0.03
CLN3-225ENST00000566824 OR4X1Q8NH49 305 aa14.84□□□□□ -0.03
CLN3-225ENST00000566824 ELOVL1Q9BW60 279 aa14.84□□□□□ -0.03
CLN3-225ENST00000566824 GPR61Q9BZJ8 451 aa14.84□□□□□ -0.03
CLN3-225ENST00000566824 AURKAIP1Q9NWT8 199 aaPredicted RBP14.84□□□□□ -0.03
CLN3-225ENST00000566824 WI2-2373I1.2A0A1W2PRP0 233 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 C7orf66A4D0T2 115 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 PRSS46E5RG02 174 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 ZNF207O43670 478 aaKnown RBP14.83□□□□□ -0.04
CLN3-225ENST00000566824 CLN5O75503 358 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 CCNKO75909 580 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 NPBWR1P48145 328 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 CD69Q07108 199 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 TIGITQ495A1 244 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 GSG1LQ6UXU4 331 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 SLC16A13Q7RTY0 426 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 TMEM190Q8WZ59 177 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 SMIM8Q96KF7 97 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 CIB3Q96Q77 187 aaPredicted RBP14.83□□□□□ -0.04
CLN3-225ENST00000566824 PSENENQ9NZ42 101 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 ALG5Q9Y673 324 aa14.83□□□□□ -0.04
CLN3-225ENST00000566824 IZUMO1RA6ND01 250 aa14.82□□□□□ -0.04
CLN3-225ENST00000566824 A8MWP6 167 aa14.82□□□□□ -0.04
CLN3-225ENST00000566824 K7EPK0 472 aa14.82□□□□□ -0.04
CLN3-225ENST00000566824 NUPL2O15504 423 aaKnown RBP14.82□□□□□ -0.04
CLN3-225ENST00000566824 IGKV1-17P01599 117 aa14.82□□□□□ -0.04
CLN3-225ENST00000566824 IGLV1-51P01701 117 aa14.82□□□□□ -0.04
CLN3-225ENST00000566824 FOLR2P14207 255 aa14.82□□□□□ -0.04
CLN3-225ENST00000566824 INSL3P51460 131 aa14.82□□□□□ -0.04
CLN3-225ENST00000566824 NOXA1Q86UR1 476 aa14.82□□□□□ -0.04
CLN3-225ENST00000566824 NPIPB3Q92617 1050 aa14.82□□□□□ -0.04
CLN3-225ENST00000566824 ACY3Q96HD9 319 aa14.82□□□□□ -0.04
CLN3-225ENST00000566824 C11orf1Q9H5F2 150 aa14.82□□□□□ -0.04
CLN3-225ENST00000566824 PEMTQ9UBM1 199 aa14.82□□□□□ -0.04
CLN3-225ENST00000566824 LSM5Q9Y4Y9 91 aaKnown RBP14.82□□□□□ -0.04
CLN3-225ENST00000566824 RPS10-NUDT3A0A1W2PQS6 291 aa14.81□□□□□ -0.04
CLN3-225ENST00000566824 NDUFA4O00483 81 aa14.81□□□□□ -0.04
CLN3-225ENST00000566824 TMEM116Q8NCL8 245 aa14.81□□□□□ -0.04
CLN3-225ENST00000566824 PRR25Q96S07 402 aa14.81□□□□□ -0.04
CLN3-225ENST00000566824 GAR1Q9NY12 217 aaKnown RBP14.81□□□□□ -0.04
CLN3-225ENST00000566824 STRAPQ9Y3F4 350 aaKnown RBP14.81□□□□□ -0.04
CLN3-225ENST00000566824 PRKDCP78527 4128 aaKnown RBP14.81□□□□□ -0.04
CLN3-225ENST00000566824 PMS2P5A8MQ11 134 aa14.8□□□□□ -0.04
CLN3-225ENST00000566824 SSNA1O43805 119 aa14.8□□□□□ -0.04
CLN3-225ENST00000566824 IGLC1P0CG04 106 aa14.8□□□□□ -0.04
CLN3-225ENST00000566824 SLC25A4P12235 298 aa14.8□□□□□ -0.04
CLN3-225ENST00000566824 CBLN1P23435 193 aa14.8□□□□□ -0.04
CLN3-225ENST00000566824 ATP5IP56385 69 aaPredicted RBP14.8□□□□□ -0.04
CLN3-225ENST00000566824 H2BFSP57053 126 aa14.8□□□□□ -0.04
CLN3-225ENST00000566824 RAB32Q13637 225 aa14.8□□□□□ -0.04
CLN3-225ENST00000566824 GAMTQ14353 236 aa14.8□□□□□ -0.04
CLN3-225ENST00000566824 TOMM20LQ6UXN7 152 aa14.8□□□□□ -0.04
CLN3-225ENST00000566824 C20orf24Q9BUV8 137 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms