RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ST8SIA2Q92186 375 aa12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 RRNAD1Q96FB5 475 aaKnown RBP12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 TMEM222Q9H0R3 208 aa12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 FNDC4Q9H6D8 234 aaPredicted RBP12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 PUS1Q9Y606 427 aaKnown RBP eCLIP12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 IGHV3OR16-13A0A075B7E8 117 aa12.65□□□□□ -0.38
VPS9D1-203ENST00000563798 IGHV3-74A0A0B4J1X5 117 aa12.65□□□□□ -0.38
VPS9D1-203ENST00000563798 A0A1B0GU03 582 aa12.65□□□□□ -0.38
VPS9D1-203ENST00000563798 CLN5O75503 358 aa12.65□□□□□ -0.38
VPS9D1-203ENST00000563798 APOHP02749 345 aaPredicted RBP12.65□□□□□ -0.38
VPS9D1-203ENST00000563798 ALDH3B2P48448 385 aa12.65□□□□□ -0.38
VPS9D1-203ENST00000563798 MEF2DQ14814 521 aa12.65□□□□□ -0.38
VPS9D1-203ENST00000563798 ZNF124Q15973 351 aa12.65□□□□□ -0.38
VPS9D1-203ENST00000563798 Q6ZRM9 215 aa12.65□□□□□ -0.38
VPS9D1-203ENST00000563798 OR4X1Q8NH49 305 aa12.65□□□□□ -0.38
VPS9D1-203ENST00000563798 GLYATL2Q8WU03 294 aa12.65□□□□□ -0.38
VPS9D1-203ENST00000563798 RTBDNQ9BSG5 229 aaPredicted RBP12.65□□□□□ -0.38
VPS9D1-203ENST00000563798 TFPI2P48307 235 aa12.64□□□□□ -0.39
VPS9D1-203ENST00000563798 HOXA1P49639 335 aaPredicted RBP12.64□□□□□ -0.39
VPS9D1-203ENST00000563798 SPCS3P61009 180 aa12.64□□□□□ -0.39
VPS9D1-203ENST00000563798 PMS2P11Q13670 270 aa12.64□□□□□ -0.39
VPS9D1-203ENST00000563798 SCGB2B2Q4G0G5 96 aa12.64□□□□□ -0.39
VPS9D1-203ENST00000563798 SMIM4Q8WVI0 70 aa12.64□□□□□ -0.39
VPS9D1-203ENST00000563798 MS4A6AQ9H2W1 248 aa12.64□□□□□ -0.39
VPS9D1-203ENST00000563798 TMEM231Q9H6L2 316 aa12.64□□□□□ -0.39
VPS9D1-203ENST00000563798 MRPL36Q9P0J6 103 aaKnown RBP12.64□□□□□ -0.39
VPS9D1-203ENST00000563798 RABL2AQ9UBK7 228 aaPredicted RBP12.64□□□□□ -0.39
VPS9D1-203ENST00000563798 RABL2BQ9UNT1 228 aa12.64□□□□□ -0.39
VPS9D1-203ENST00000563798 A0A1W2PS18 150 aa12.63□□□□□ -0.39
VPS9D1-203ENST00000563798 CTDSP2O14595 271 aa12.63□□□□□ -0.39
VPS9D1-203ENST00000563798 CTDSPLO15194 276 aa12.63□□□□□ -0.39
VPS9D1-203ENST00000563798 CRYBB3P26998 211 aa12.63□□□□□ -0.39
VPS9D1-203ENST00000563798 DHODHQ02127 395 aa12.63□□□□□ -0.39
VPS9D1-203ENST00000563798 GBGT1Q8N5D6 347 aa12.63□□□□□ -0.39
VPS9D1-203ENST00000563798 RBPMSQ93062 196 aaKnown RBP12.63□□□□□ -0.39
VPS9D1-203ENST00000563798 MRPS26Q9BYN8 205 aaKnown RBP12.63□□□□□ -0.39
VPS9D1-203ENST00000563798 ENY2Q9NPA8 101 aa12.63□□□□□ -0.39
VPS9D1-203ENST00000563798 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.63□□□□□ -0.39
VPS9D1-203ENST00000563798 KLK5Q9Y337 293 aaPredicted RBP12.63□□□□□ -0.39
VPS9D1-203ENST00000563798 IGKV3-7A0A075B6H7 116 aa12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 TRAV30A0A087WSZ9 112 aa12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 TEX13DA0A0J9YY54 714 aaPredicted RBP12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 IGKV1-17P01599 117 aa12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 OR5AC1P0C628 307 aa12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 NPPCP23582 126 aa12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 OPRK1P41145 380 aa12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 HTR2BP41595 481 aa12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 MLANAQ16655 118 aa12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 LHFPL5Q8TAF8 219 aa12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 C11orf68Q9H3H3 251 aaKnown RBP12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 NAA60Q9H7X0 242 aa12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 GPR132Q9UNW8 380 aa12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 C14orf166Q9Y224 244 aaKnown RBP12.62□□□□□ -0.39
VPS9D1-203ENST00000563798 DISC1C4P0D8 188 aa12.61□□□□□ -0.39
VPS9D1-203ENST00000563798 DNASE2O00115 360 aaPredicted RBP12.61□□□□□ -0.39
VPS9D1-203ENST00000563798 RGS5O15539 181 aa12.61□□□□□ -0.39
VPS9D1-203ENST00000563798 SCGB2A1O75556 95 aa12.61□□□□□ -0.39
VPS9D1-203ENST00000563798 SPCS2Q15005 226 aa12.61□□□□□ -0.39
VPS9D1-203ENST00000563798 C2orf83Q53S99 150 aa12.61□□□□□ -0.39
VPS9D1-203ENST00000563798 GPR141Q7Z602 305 aa12.61□□□□□ -0.39
VPS9D1-203ENST00000563798 SELENOHQ8IZQ5 122 aaKnown RBP12.61□□□□□ -0.39
VPS9D1-203ENST00000563798 RARRES2Q99969 163 aa12.61□□□□□ -0.39
VPS9D1-203ENST00000563798 TMEM56-RWDD3S4R434 201 aa12.61□□□□□ -0.39
VPS9D1-203ENST00000563798 U3KQE9 123 aa12.61□□□□□ -0.39
VPS9D1-203ENST00000563798 RPS10-NUDT3A0A1W2PQS6 291 aa12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 CRYM-AS1A6NIL9 109 aa12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 AKAIN1P0CW23 69 aa12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 DEFB131AP59861 70 aa12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 FAAP20Q6NZ36 180 aa12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 FAM24BQ8N5W8 94 aa12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 OR4C16Q8NGL9 310 aa12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 RNASE11Q8TAA1 199 aaKnown RBP12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 RNASEH2CQ8TDP1 164 aaKnown RBP12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 GRAMD2BQ96HH9 432 aa12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 METTL26Q96S19 204 aa12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 BCL7BQ9BQE9 202 aa12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 CACFD1Q9UGQ2 172 aa12.6□□□□□ -0.39
VPS9D1-203ENST00000563798 IGHV3-66A0A0C4DH42 116 aa12.59□□□□□ -0.39
VPS9D1-203ENST00000563798 K7EQG2 157 aa12.59□□□□□ -0.39
VPS9D1-203ENST00000563798 LY6G6CO95867 125 aa12.59□□□□□ -0.39
VPS9D1-203ENST00000563798 SLC25A4P12235 298 aa12.59□□□□□ -0.39
VPS9D1-203ENST00000563798 OR11H2Q8NH07 326 aa12.59□□□□□ -0.39
VPS9D1-203ENST00000563798 PHLDA1Q8WV24 401 aaPredicted RBP12.59□□□□□ -0.39
VPS9D1-203ENST00000563798 IL22RA2Q969J5 263 aa12.59□□□□□ -0.39
VPS9D1-203ENST00000563798 GPR146Q96CH1 333 aa12.59□□□□□ -0.39
VPS9D1-203ENST00000563798 PRRT1Q99946 306 aa12.59□□□□□ -0.39
VPS9D1-203ENST00000563798 CCDC59Q9P031 241 aaKnown RBP12.59□□□□□ -0.39
VPS9D1-203ENST00000563798 GSTZ1O43708 216 aaPredicted RBP12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 IGLC1P0CG04 106 aa12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 P2RY1P47900 373 aa12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 YPEL3P61236 119 aaPredicted RBP12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 RPL11P62913 178 aaKnown RBP12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 PRSS54Q6PEW0 395 aa12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 OR1S2Q8NGQ3 325 aa12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 DYNC2LI1Q8TCX1 351 aa12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 DCANP1Q8TF63 244 aa12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 RAB2BQ8WUD1 216 aa12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 TMEM230Q96A57 120 aa12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 DIRAS2Q96HU8 199 aa12.58□□□□□ -0.4
VPS9D1-203ENST00000563798 MFFQ9GZY8 342 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms