RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 CD24P25063 80 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 RPL29P47914 159 aaKnown RBP7.1□□□□□ -1.27
VPS39-207ENST00000563692 BPIFB3P59826 476 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 GAMTQ14353 236 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 FXYD3Q14802 87 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 ARSJQ5FYB0 599 aaPredicted RBP7.1□□□□□ -1.27
VPS39-207ENST00000563692 C10orf55Q5SWW7 151 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 DYNAPQ8N1N2 210 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 Q8N6K4 173 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 C3orf56Q8N813 242 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 SSMEM1Q8WWF3 244 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 MEGF9Q9H1U4 602 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 CTXND1A0A1B0GTU2 59 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 A0A1B0GV50 99 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 RBFOX3A6NFN3 312 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 F8W036 122 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 MT-CO2P00403 227 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 FSHBP01225 129 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 CD5P06127 495 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 TAGLN2P37802 199 aaKnown RBP7.09□□□□□ -1.27
VPS39-207ENST00000563692 PPT1P50897 306 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 PVRIGQ6DKI7 326 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 ACSM6Q6P461 480 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 LCN15Q6UWW0 184 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 SLC16A13Q7RTY0 426 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 PIP4P2Q8N4L2 257 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 SIGLECL1Q8N7X8 197 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 C17orf50Q8WW18 174 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 MISP3Q96FF7 219 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 LINC00052Q96N35 136 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 MGST2Q99735 147 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 VSIRQ9H7M9 311 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 LSM4Q9Y4Z0 139 aaKnown RBP7.09□□□□□ -1.27
VPS39-207ENST00000563692 F11RQ9Y624 299 aaKnown RBP7.09□□□□□ -1.27
VPS39-207ENST00000563692 PXMP4Q9Y6I8 212 aa7.09□□□□□ -1.27
VPS39-207ENST00000563692 IGHV3OR16-10A0A075B7F0 116 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 TRAV40A0A0B4J280 105 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 MAP1LC3B2A6NCE7 125 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 TEX22C9J3V5 150 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 REG1AP05451 166 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 FBP1P09467 338 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 PAX6P26367 422 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 CDC34P49427 236 aaPredicted RBP7.08□□□□□ -1.28
VPS39-207ENST00000563692 B2MP61769 119 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 SELENOTP62341 195 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 CX3CL1P78423 397 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 PMS2P11Q13670 270 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 FAM122CQ6P4D5 195 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 SPSB3Q6PJ21 355 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 CCDC28AQ8IWP9 274 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 RPP25LQ8N5L8 163 aaKnown RBP7.08□□□□□ -1.28
VPS39-207ENST00000563692 OR2T6Q8NHC8 308 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 ARPC1AQ92747 370 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 ACY3Q96HD9 319 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 RCC1LQ96I51 464 aaKnown RBP7.08□□□□□ -1.28
VPS39-207ENST00000563692 AJUBAQ96IF1 538 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 TMEM68Q96MH6 324 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 GGTLC1Q9BX51 225 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 SEC11CQ9BY50 192 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 MAP1LC3BQ9GZQ8 125 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 WNT10AQ9GZT5 417 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 THYN1Q9P016 225 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 SLC45A2Q9UMX9 530 aa7.08□□□□□ -1.28
VPS39-207ENST00000563692 ARHGAP32A7KAX9 2087 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 TMEM89A2RUT3 159 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 ZFP92A6NM28 416 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 NPIPB5A8MRT5 1133 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 SEC14L6B5MCN3 397 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 HLA-DRB1P01911 266 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 APOC3P02656 99 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 FABP1P07148 127 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 CRYGCP07315 174 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 IGHV4-38-2P0DP08 117 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 AREGP15514 252 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 CTRB1P17538 263 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 OR10J1P30954 320 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 RHOBP62745 196 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 CCL20P78556 96 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 SRSF3P84103 164 aaKnown RBP7.07□□□□□ -1.28
VPS39-207ENST00000563692 DEFA5Q01523 94 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 MLANAQ16655 118 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 KHDC3LQ587J8 217 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 KLF17Q5JT82 389 aaPredicted RBP7.07□□□□□ -1.28
VPS39-207ENST00000563692 MIC13Q5XKP0 118 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 RUSC1-AS1Q66K80 236 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 CTRB2Q6GPI1 263 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 CYP2G1PQ6ZSU1 146 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 SLC35E3Q7Z769 313 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 TTC9CQ8N5M4 171 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 STPG3Q8N7X2 389 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 Q8N9W7 124 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 NPIPB3Q92617 1050 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 RBM14Q96PK6 669 aaKnown RBP7.07□□□□□ -1.28
VPS39-207ENST00000563692 RNF2Q99496 336 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 SLC35B3Q9H1N7 401 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 TMEM231Q9H6L2 316 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 ESM1Q9NQ30 184 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 GNG13Q9P2W3 67 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 PITPNC1Q9UKF7 332 aa7.07□□□□□ -1.28
VPS39-207ENST00000563692 A0A0U1RQK1 487 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms