RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CRYM-AS1A6NIL9 109 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 H3BMQ9 156 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 CTDSPLO15194 276 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 SPRY2O43597 315 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 DFFBO76075 338 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 AKAIN1P0CW23 69 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 SSBP1Q04837 148 aaKnown RBP13.06□□□□□ -0.32
HDDC3-205ENST00000559898 PMS2P11Q13670 270 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 TIGITQ495A1 244 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 LYG2Q86SG7 212 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 DUSP18Q8NEJ0 188 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 RNASE11Q8TAA1 199 aaKnown RBP13.06□□□□□ -0.32
HDDC3-205ENST00000559898 RAB2BQ8WUD1 216 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 C15orf40Q8WUR7 153 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 RRNAD1Q96FB5 475 aaKnown RBP13.06□□□□□ -0.32
HDDC3-205ENST00000559898 SOSTQ9BQB4 213 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 VSIRQ9H7M9 311 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 CACNG5Q9UF02 275 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 C14orf166Q9Y224 244 aaKnown RBP13.06□□□□□ -0.32
HDDC3-205ENST00000559898 AGRNO00468 2067 aa13.05□□□□□ -0.32
HDDC3-205ENST00000559898 DISC1C4P0D8 188 aa13.05□□□□□ -0.32
HDDC3-205ENST00000559898 TNFSF8P32971 234 aa13.05□□□□□ -0.32
HDDC3-205ENST00000559898 TMBIM6P55061 237 aa13.05□□□□□ -0.32
HDDC3-205ENST00000559898 AARDQ4LEZ3 155 aa13.05□□□□□ -0.32
HDDC3-205ENST00000559898 TMEM268Q5VZI3 342 aa13.05□□□□□ -0.32
HDDC3-205ENST00000559898 ZNF600Q6ZNG1 722 aa13.05□□□□□ -0.32
HDDC3-205ENST00000559898 PDCD10Q9BUL8 212 aa13.05□□□□□ -0.32
HDDC3-205ENST00000559898 IGKV1-17P01599 117 aa13.04□□□□□ -0.32
HDDC3-205ENST00000559898 OPRK1P41145 380 aa13.04□□□□□ -0.32
HDDC3-205ENST00000559898 NPBWR1P48145 328 aa13.04□□□□□ -0.32
HDDC3-205ENST00000559898 MRPS10P82664 201 aaKnown RBP13.04□□□□□ -0.32
HDDC3-205ENST00000559898 TMEM187Q14656 261 aa13.04□□□□□ -0.32
HDDC3-205ENST00000559898 LEMD1Q68G75 181 aa13.04□□□□□ -0.32
HDDC3-205ENST00000559898 RBPMSQ93062 196 aaKnown RBP13.04□□□□□ -0.32
HDDC3-205ENST00000559898 RNF183Q96D59 192 aa13.04□□□□□ -0.32
HDDC3-205ENST00000559898 MS4A6AQ9H2W1 248 aa13.04□□□□□ -0.32
HDDC3-205ENST00000559898 GSTZ1O43708 216 aaPredicted RBP13.03□□□□□ -0.32
HDDC3-205ENST00000559898 CLN5O75503 358 aa13.03□□□□□ -0.32
HDDC3-205ENST00000559898 APOC4P55056 127 aa13.03□□□□□ -0.32
HDDC3-205ENST00000559898 SPCS3P61009 180 aa13.03□□□□□ -0.32
HDDC3-205ENST00000559898 SUPT4H1P63272 117 aaKnown RBP13.03□□□□□ -0.32
HDDC3-205ENST00000559898 TNFRSF9Q07011 255 aa13.03□□□□□ -0.32
HDDC3-205ENST00000559898 RBMS2Q15434 407 aaKnown RBP13.03□□□□□ -0.32
HDDC3-205ENST00000559898 Q6ZWC4 215 aa13.03□□□□□ -0.32
HDDC3-205ENST00000559898 GALNT14Q96FL9 552 aa13.03□□□□□ -0.32
HDDC3-205ENST00000559898 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.03□□□□□ -0.32
HDDC3-205ENST00000559898 ATG12O94817 140 aa13.02□□□□□ -0.33
HDDC3-205ENST00000559898 SURF2Q15527 256 aaPredicted RBP13.02□□□□□ -0.33
HDDC3-205ENST00000559898 STPG3Q8N7X2 389 aa13.02□□□□□ -0.33
HDDC3-205ENST00000559898 OR4X1Q8NH49 305 aa13.02□□□□□ -0.33
HDDC3-205ENST00000559898 ENY2Q9NPA8 101 aa13.02□□□□□ -0.33
HDDC3-205ENST00000559898 TP53TG1Q9Y2A0 90 aa13.02□□□□□ -0.33
HDDC3-205ENST00000559898 TMEM56-RWDD3S4R434 201 aa13.02□□□□□ -0.33
HDDC3-205ENST00000559898 KIR2DL5BA0A0G2JN68 375 aa13.01□□□□□ -0.33
HDDC3-205ENST00000559898 KIR2DL5BA0A0G2JPC4 375 aa13.01□□□□□ -0.33
HDDC3-205ENST00000559898 BMI1P35226 326 aa13.01□□□□□ -0.33
HDDC3-205ENST00000559898 RPL5P46777 297 aaKnown RBP13.01□□□□□ -0.33
HDDC3-205ENST00000559898 SUB1P53999 127 aaKnown RBP eCLIP13.01□□□□□ -0.33
HDDC3-205ENST00000559898 DEFB131AP59861 70 aa13.01□□□□□ -0.33
HDDC3-205ENST00000559898 DHODHQ02127 395 aa13.01□□□□□ -0.33
HDDC3-205ENST00000559898 PRSS54Q6PEW0 395 aa13.01□□□□□ -0.33
HDDC3-205ENST00000559898 LYZL2Q7Z4W2 148 aa13.01□□□□□ -0.33
HDDC3-205ENST00000559898 KIR2DL5AQ8N109 375 aa13.01□□□□□ -0.33
HDDC3-205ENST00000559898 OR52E5Q8NH55 327 aa13.01□□□□□ -0.33
HDDC3-205ENST00000559898 KIR2DL5BQ8NHK3 375 aa13.01□□□□□ -0.33
HDDC3-205ENST00000559898 HEYLQ9NQ87 328 aaPredicted RBP13.01□□□□□ -0.33
HDDC3-205ENST00000559898 CEBPZOSA8MTT3 80 aa13□□□□□ -0.33
HDDC3-205ENST00000559898 B3GALNT1O75752 331 aa13□□□□□ -0.33
HDDC3-205ENST00000559898 IGLC1P0CG04 106 aa13□□□□□ -0.33
HDDC3-205ENST00000559898 AKR1C4P17516 323 aa13□□□□□ -0.33
HDDC3-205ENST00000559898 RND2P52198 227 aa13□□□□□ -0.33
HDDC3-205ENST00000559898 GSG1LQ6UXU4 331 aa13□□□□□ -0.33
HDDC3-205ENST00000559898 FAM219AQ8IW50 185 aa13□□□□□ -0.33
HDDC3-205ENST00000559898 MCFD2Q8NI22 146 aa13□□□□□ -0.33
HDDC3-205ENST00000559898 PRRT1Q99946 306 aa13□□□□□ -0.33
HDDC3-205ENST00000559898 GINS3Q9BRX5 216 aa13□□□□□ -0.33
HDDC3-205ENST00000559898 MCUBQ9NWR8 336 aa13□□□□□ -0.33
HDDC3-205ENST00000559898 BIRC6Q9NR09 4857 aa12.99□□□□□ -0.33
HDDC3-205ENST00000559898 CXorf65A6NEN9 183 aa12.99□□□□□ -0.33
HDDC3-205ENST00000559898 FABP12A6NFH5 140 aa12.99□□□□□ -0.33
HDDC3-205ENST00000559898 CORTO00230 105 aa12.99□□□□□ -0.33
HDDC3-205ENST00000559898 UBE2CO00762 179 aa12.99□□□□□ -0.33
HDDC3-205ENST00000559898 CRYBB3P26998 211 aa12.99□□□□□ -0.33
HDDC3-205ENST00000559898 RPL11P62913 178 aaKnown RBP12.99□□□□□ -0.33
HDDC3-205ENST00000559898 KLF9Q13886 244 aaPredicted RBP12.99□□□□□ -0.33
HDDC3-205ENST00000559898 C2orf83Q53S99 150 aa12.99□□□□□ -0.33
HDDC3-205ENST00000559898 TRIM63Q969Q1 353 aa12.99□□□□□ -0.33
HDDC3-205ENST00000559898 BCL7BQ9BQE9 202 aa12.99□□□□□ -0.33
HDDC3-205ENST00000559898 CSTL1Q9H114 145 aa12.99□□□□□ -0.33
HDDC3-205ENST00000559898 RABAC1Q9UI14 185 aa12.99□□□□□ -0.33
HDDC3-205ENST00000559898 DNASE2O00115 360 aaPredicted RBP12.98□□□□□ -0.33
HDDC3-205ENST00000559898 DEFB4AO15263 64 aa12.98□□□□□ -0.33
HDDC3-205ENST00000559898 NPPCP23582 126 aa12.98□□□□□ -0.33
HDDC3-205ENST00000559898 HTR2BP41595 481 aa12.98□□□□□ -0.33
HDDC3-205ENST00000559898 P2RY1P47900 373 aa12.98□□□□□ -0.33
HDDC3-205ENST00000559898 ZNF79Q15937 498 aa12.98□□□□□ -0.33
HDDC3-205ENST00000559898 NMSQ5H8A3 153 aa12.98□□□□□ -0.33
HDDC3-205ENST00000559898 SLC24A4Q8NFF2 622 aa12.98□□□□□ -0.33
HDDC3-205ENST00000559898 RBKSQ9H477 322 aa12.98□□□□□ -0.33
HDDC3-205ENST00000559898 U3KQE9 123 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms