RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 LEMD1Q68G75 181 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 LILRB2Q8N423 598 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 OR52I2Q8NH67 350 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 C11orf45Q8TAV5 145 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 AP3S1Q92572 193 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 RRNAD1Q96FB5 475 aaKnown RBP8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 MFFQ9GZY8 342 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 ENY2Q9NPA8 101 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 COPZ2Q9P299 210 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 FBXL17Q9UF56 701 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 TRAV2A0A0B4J234 112 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 A0A1B0GU03 582 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 A0A1W2PS18 150 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 H3BMQ9 156 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 SCGB2A1O75556 95 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 IFNA4P05014 189 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 P0C879 139 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 RNASE2P10153 161 aaKnown RBP8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 NPPCP23582 126 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 OPRK1P41145 380 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 NANOS2P60321 138 aaKnown RBP8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 TMEM187Q14656 261 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 RBMS2Q15434 407 aaKnown RBP8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 SP6Q3SY56 376 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 LGALS9CQ6DKI2 356 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 PVRIGQ6DKI7 326 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 STHQ8IWL8 128 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 RPP25LQ8N5L8 163 aaKnown RBP8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 CCDC71LQ8N9Z2 235 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 RNASE11Q8TAA1 199 aaKnown RBP8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 ZFAND1Q8TCF1 268 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 C11orf68Q9H3H3 251 aaKnown RBP8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 EXTL2Q9UBQ6 330 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 MTFP1Q9UDX5 166 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 RABAC1Q9UI14 185 aa8.11□□□□□ -1.11
CCDC88C-213ENST00000557455 AGRNO00468 2067 aa8.1□□□□□ -1.11
CCDC88C-213ENST00000557455 CLN5O75503 358 aa8.1□□□□□ -1.11
CCDC88C-213ENST00000557455 TBPP20226 339 aa8.1□□□□□ -1.11
CCDC88C-213ENST00000557455 SCGB2B2Q4G0G5 96 aa8.1□□□□□ -1.11
CCDC88C-213ENST00000557455 FAM24BQ8N5W8 94 aa8.1□□□□□ -1.11
CCDC88C-213ENST00000557455 TERB2Q8NHR7 220 aa8.1□□□□□ -1.11
CCDC88C-213ENST00000557455 TMEM230Q96A57 120 aa8.1□□□□□ -1.11
CCDC88C-213ENST00000557455 METTL26Q96S19 204 aa8.1□□□□□ -1.11
CCDC88C-213ENST00000557455 DNAH10Q8IVF4 4471 aa8.1□□□□□ -1.11
CCDC88C-213ENST00000557455 DEFB4AO15263 64 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 DEDDO75618 318 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 B3GALNT1O75752 331 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 GABARAPO95166 117 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 ZNF182P17025 639 aaPredicted RBP8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 UCP1P25874 307 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 CRYBB3P26998 211 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 TAS2R19P59542 299 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 MLANAQ16655 118 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 TMEM229BQ8NBD8 167 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 STXBP6Q8NFX7 210 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 OR4D10Q8NGI6 311 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 OR13C8Q8NGS7 320 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 OR4X1Q8NH49 305 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 MARCH1Q8TCQ1 289 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 C2CD4CQ8TF44 421 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 C15orf40Q8WUR7 153 aa8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 NARS2Q96I59 477 aaKnown RBP8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 FNDC4Q9H6D8 234 aaPredicted RBP8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 MRPL36Q9P0J6 103 aaKnown RBP8.09□□□□□ -1.11
CCDC88C-213ENST00000557455 TRAV30A0A087WSZ9 112 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 A0A0G2JRQ6 117 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 RAB3DO95716 219 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 CD74P04233 296 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 P2RY1P47900 373 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 SPCS3P61009 180 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 CTF1Q16619 201 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 BSXQ3C1V8 233 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 TIGITQ495A1 244 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 STEAP1BQ6NZ63 245 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 FAM219AQ8IW50 185 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 GRAMD2BQ96HH9 432 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 ABHD1Q96SE0 405 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 NAA50Q9GZZ1 169 aaKnown RBP8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 TMEM222Q9H0R3 208 aa8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 C14orf166Q9Y224 244 aaKnown RBP8.08□□□□□ -1.12
CCDC88C-213ENST00000557455 TEX13DA0A0J9YY54 714 aaPredicted RBP8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 RPS10-NUDT3A0A1W2PQS6 291 aa8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 K7EQG2 157 aa8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 CDS2O95674 445 aa8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 IGKV1-17P01599 117 aa8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 OR5AC1P0C628 307 aa8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 HTR2BP41595 481 aa8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 EIF2B2P49770 351 aaKnown RBP8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 TCTAP57738 103 aa8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 TMEM41BQ5BJD5 291 aa8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 MORN3Q6PF18 240 aaPredicted RBP8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 Q6ZRM9 215 aa8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 TRPT1Q86TN4 253 aaKnown RBP8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 OR52E5Q8NH55 327 aa8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 HEYLQ9NQ87 328 aaPredicted RBP8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.07□□□□□ -1.12
CCDC88C-213ENST00000557455 VPS13DQ5THJ4 4388 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 C11orf94C9JXX5 98 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 GABARAPH6UMI1 98 aa8.06□□□□□ -1.12
CCDC88C-213ENST00000557455 RGS5O15539 181 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms