RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 ASPMQ8IZT6 3477 aa12.21□□□□□ -0.45
CUX1-215ENST00000556210 SERTM2A0A1B0GWG4 89 aa12.21□□□□□ -0.45
CUX1-215ENST00000556210 C17orf100A8MU93 164 aa12.21□□□□□ -0.45
CUX1-215ENST00000556210 IGLV2-14P01704 120 aa12.21□□□□□ -0.45
CUX1-215ENST00000556210 ARSJQ5FYB0 599 aaPredicted RBP12.21□□□□□ -0.45
CUX1-215ENST00000556210 TIMD4Q96H15 378 aa12.21□□□□□ -0.45
CUX1-215ENST00000556210 PAXXQ9BUH6 204 aa12.21□□□□□ -0.45
CUX1-215ENST00000556210 SFXN3Q9BWM7 321 aa12.21□□□□□ -0.45
CUX1-215ENST00000556210 FBXL15Q9H469 300 aa12.21□□□□□ -0.46
CUX1-215ENST00000556210 ARL2-SNX15V9GYD0 113 aa12.21□□□□□ -0.46
CUX1-215ENST00000556210 PGPA6NDG6 321 aa12.21□□□□□ -0.46
CUX1-215ENST00000556210 GFRA3O60609 400 aa12.21□□□□□ -0.46
CUX1-215ENST00000556210 HINT1P49773 126 aaPredicted RBP12.21□□□□□ -0.46
CUX1-215ENST00000556210 PDPNQ86YL7 162 aa12.21□□□□□ -0.46
CUX1-215ENST00000556210 ODF3L1Q8IXM7 274 aa12.21□□□□□ -0.46
CUX1-215ENST00000556210 C5orf30Q96GV9 206 aa12.21□□□□□ -0.46
CUX1-215ENST00000556210 LINC00479Q96M42 142 aa12.21□□□□□ -0.46
CUX1-215ENST00000556210 AGMATQ9BSE5 352 aa12.21□□□□□ -0.46
CUX1-215ENST00000556210 IFI27L2Q9H2X8 130 aa12.21□□□□□ -0.46
CUX1-215ENST00000556210 TMEM167BQ9NRX6 74 aa12.21□□□□□ -0.46
CUX1-215ENST00000556210 NCKAP5O14513 1909 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 CCDC168Q8NDH2 2452 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 ZFYVE26Q68DK2 2539 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 USP9YO00507 2555 aaPredicted RBP12.2□□□□□ -0.46
CUX1-215ENST00000556210 DMDP11532 3685 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 AP1S3Q96PC3 154 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 MPDU1O75352 247 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 DIAPH2-AS1Q14236 149 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 WDR73Q6P4I2 378 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 WNT10AQ9GZT5 417 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 POLR3KQ9Y2Y1 108 aaPredicted RBP12.2□□□□□ -0.46
CUX1-215ENST00000556210 IGHV3OR16-13A0A075B7E8 117 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 IGHV3-74A0A0B4J1X5 117 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 A0A1W2PN81 502 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 RELBQ01201 579 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 FAM57AQ8TBR7 257 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 MIEN1Q9BRT3 115 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 TNFRSF19Q9NS68 423 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 DKK4Q9UBT3 224 aa12.2□□□□□ -0.46
CUX1-215ENST00000556210 C15orf61A6NNL5 157 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 USF1P22415 310 aaPredicted RBP12.19□□□□□ -0.46
CUX1-215ENST00000556210 Q56UQ5 140 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 ZNF114Q8NC26 417 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 C11orf1Q9H5F2 150 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 FAM215AQ9Y5M1 114 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 MYO9AB2RTY4 2548 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 A0A0G2JNJ9 132 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 IGHV3-23P01764 117 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 SRIP30626 198 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 TIMP3P35625 211 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 RPL27AP46776 148 aaKnown RBP12.19□□□□□ -0.46
CUX1-215ENST00000556210 RPL11P62913 178 aaKnown RBP12.19□□□□□ -0.46
CUX1-215ENST00000556210 GNG5P63218 68 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 IBA57Q5T440 356 aaKnown RBP12.19□□□□□ -0.46
CUX1-215ENST00000556210 OR4C5Q8NGB2 326 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 VSTM2AQ8TAG5 236 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 Q9UFV3 132 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 IGKV3-7A0A075B6H7 116 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 DPRXA6NFQ7 191 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 CHEK1O14757 476 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 C22orf34Q6ZV56 151 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 PNKDQ8N490 385 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 OR4B1Q8NGF8 309 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 RBM14Q96PK6 669 aaKnown RBP12.19□□□□□ -0.46
CUX1-215ENST00000556210 ASCL2Q99929 193 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 DNAJC4Q9NNZ3 241 aa12.19□□□□□ -0.46
CUX1-215ENST00000556210 MUC21A0A0G2JKD1 596 aa12.18□□□□□ -0.46
CUX1-215ENST00000556210 IGHV1-69-2A0A0G2JMI3 117 aa12.18□□□□□ -0.46
CUX1-215ENST00000556210 MUC21A0A140T8X8 626 aa12.18□□□□□ -0.46
CUX1-215ENST00000556210 MUC21Q5SSG8 566 aa12.18□□□□□ -0.46
CUX1-215ENST00000556210 OR4C13Q8NGP0 309 aa12.18□□□□□ -0.46
CUX1-215ENST00000556210 BET1LQ9NYM9 111 aa12.18□□□□□ -0.46
CUX1-215ENST00000556210 ARHGAP32A7KAX9 2087 aa12.18□□□□□ -0.46
CUX1-215ENST00000556210 TMEM208Q9BTX3 173 aa12.18□□□□□ -0.46
CUX1-215ENST00000556210 TBL2Q9Y4P3 447 aaKnown RBP12.18□□□□□ -0.46
CUX1-215ENST00000556210 TDGF1P3P51864 188 aa12.18□□□□□ -0.46
CUX1-215ENST00000556210 PRRX1P54821 245 aa12.18□□□□□ -0.46
CUX1-215ENST00000556210 MBNL2Q5VZF2 373 aaKnown RBP12.18□□□□□ -0.46
CUX1-215ENST00000556210 MUC15Q8N387 334 aa12.18□□□□□ -0.46
CUX1-215ENST00000556210 FAM19A2Q8N3H0 131 aa12.18□□□□□ -0.46
CUX1-215ENST00000556210 AMMECR1Q9Y4X0 333 aaPredicted RBP12.18□□□□□ -0.46
CUX1-215ENST00000556210 DLEU1O43261 78 aa12.17□□□□□ -0.46
CUX1-215ENST00000556210 C8orf88P0DMB2 117 aa12.17□□□□□ -0.46
CUX1-215ENST00000556210 FOXA3P55318 350 aaPredicted RBP12.17□□□□□ -0.46
CUX1-215ENST00000556210 IL36BQ9NZH7 164 aa12.17□□□□□ -0.46
CUX1-215ENST00000556210 YTHDF2Q9Y5A9 579 aaKnown RBP12.17□□□□□ -0.46
CUX1-215ENST00000556210 MYO18BQ8IUG5 2567 aa12.17□□□□□ -0.46
CUX1-215ENST00000556210 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.17□□□□□ -0.46
CUX1-215ENST00000556210 M0R2Z0 102 aa12.17□□□□□ -0.46
CUX1-215ENST00000556210 TXNDC17Q9BRA2 123 aa12.17□□□□□ -0.46
CUX1-215ENST00000556210 ELOVL5Q9NYP7 299 aa12.17□□□□□ -0.46
CUX1-215ENST00000556210 WASHC3Q9Y3C0 194 aa12.17□□□□□ -0.46
CUX1-215ENST00000556210 PPIAL4CA0A0B4J2A2 164 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 PPIAL4GP0DN37 164 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 LMO1P25800 156 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 GPR6P46095 362 aaPredicted RBP12.16□□□□□ -0.46
CUX1-215ENST00000556210 LINC00305Q7Z4B0 112 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 UQCR10Q9UDW1 63 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 CFAP47Q6ZTR5 3102 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 IGHV3OR16-10A0A075B7F0 116 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms