RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774		Q6ZWC4	215 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	MRPL52	Q86TS9	123 aa	Known RBP	10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	NPIPB3	Q92617	1050 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	TNFRSF14	Q92956	283 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	CHRDL1	Q9BU40	450 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	FNDC4	Q9H6D8	234 aa	Predicted RBP	10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	NGB	Q9NPG2	151 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	SSUH2	Q9Y2M2	353 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	IGKV1D-37	A0A075B6S9	117 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	TRAV5	A0A0B4J249	113 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	IZUMO1R	A6ND01	250 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	ZNF705F	A8MVS1	300 aa	Predicted RBP	10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	ZNF705D	P0CH99	300 aa	Predicted RBP	10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	ZNF705B	P0CI00	300 aa	Predicted RBP	10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	MGST1	P10620	155 aa	Known RBP	10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	TEX43	Q6ZNM6	134 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	ZNF329	Q86UD4	541 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	TEX45	Q8NA69	505 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	CCL17	Q92583	94 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	RNASE6	Q93091	150 aa	Known RBP	10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	TBX15	Q96SF7	602 aa		10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	10.89	□□□□□ -0.67
SHMT2-222	ENST00000555774	FRY	Q5TBA9	3013 aa		10.88	□□□□□ -0.67
SHMT2-222	ENST00000555774	BRS3	P32247	399 aa		10.88	□□□□□ -0.67
SHMT2-222	ENST00000555774	MORN5	Q5VZ52	161 aa		10.88	□□□□□ -0.67
SHMT2-222	ENST00000555774	LYPD2	Q6UXB3	125 aa		10.88	□□□□□ -0.67
SHMT2-222	ENST00000555774	ZCCHC24	Q8N2G6	241 aa	Known RBP	10.88	□□□□□ -0.67
SHMT2-222	ENST00000555774	WIPF2	Q8TF74	440 aa	Predicted RBP	10.88	□□□□□ -0.67
SHMT2-222	ENST00000555774	SMIM12	Q96EX1	92 aa		10.88	□□□□□ -0.67
SHMT2-222	ENST00000555774	MISP3	Q96FF7	219 aa		10.88	□□□□□ -0.67
SHMT2-222	ENST00000555774	CTSZ	Q9UBR2	303 aa		10.88	□□□□□ -0.67
SHMT2-222	ENST00000555774	ZNF835	Q9Y2P0	537 aa		10.88	□□□□□ -0.67
SHMT2-222	ENST00000555774	PEX7	O00628	323 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	CRYGC	P07315	174 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	IGHV1-8	P0DP01	117 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	PAX2	Q02962	417 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	FXYD3	Q14802	87 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	USF2	Q15853	346 aa	Predicted RBP	10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	TPTE2P1	Q5T6R2	138 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	PATE2	Q6UY27	113 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	PERP	Q96FX8	193 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	C20orf144	Q9BQM9	153 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	HSPB9	Q9BQS6	159 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	SAMD10	Q9BYL1	202 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	CAD	P27708	2225 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774		A0A1W2PPI3	338 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	FSTL3	O95633	263 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	SNRPC	P09234	159 aa	Known RBP	10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	SSBP2	P81877	361 aa	Predicted RBP	10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	DIAPH2-AS1	Q14236	149 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	C10orf55	Q5SWW7	151 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	GFRAL	Q6UXV0	394 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	C22orf15	Q8WYQ4	148 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	FXYD5	Q96DB9	178 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	GRAMD2B	Q96HH9	432 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	TRGV9	Q99603	122 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	GNB4	Q9HAV0	340 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	DYNLRB1	Q9NP97	96 aa		10.87	□□□□□ -0.67
SHMT2-222	ENST00000555774	SLC25A17	O43808	307 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	FRMD6-AS1	P0C7T7	363 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	MYCNOS	P40205	109 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	TOMM20L	Q6UXN7	152 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	SIGLECL1	Q8N7X8	197 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	MBD6	Q96DN6	1003 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	KCNS1	Q96KK3	526 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	TMEM133	Q9H2Q1	129 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	SERTAD4	Q9NUC0	356 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	CORT	O00230	105 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	REG1A	P05451	166 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	PYY	P10082	97 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	TMEM183B	Q1AE95	376 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	MRGPRG-AS1	Q2M3A8	158 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	ZNF331	Q9NQX6	463 aa	Predicted RBP	10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774	ZNF586	Q9NXT0	402 aa		10.86	□□□□□ -0.67
SHMT2-222	ENST00000555774		M0R143	59 aa		10.85	□□□□□ -0.67
SHMT2-222	ENST00000555774	GPX1	P07203	203 aa		10.85	□□□□□ -0.67
SHMT2-222	ENST00000555774	ABHD17A	Q96GS6	310 aa		10.85	□□□□□ -0.67
SHMT2-222	ENST00000555774	IGLC7	A0M8Q6	106 aa		10.85	□□□□□ -0.67
SHMT2-222	ENST00000555774	SHISA9	B4DS77	424 aa		10.85	□□□□□ -0.67
SHMT2-222	ENST00000555774	TCL1A	P56279	114 aa		10.85	□□□□□ -0.67
SHMT2-222	ENST00000555774	LINC00305	Q7Z4B0	112 aa		10.85	□□□□□ -0.67
SHMT2-222	ENST00000555774	TNFRSF19	Q9NS68	423 aa		10.85	□□□□□ -0.67
SHMT2-222	ENST00000555774	CACNA1H	O95180	2353 aa		10.85	□□□□□ -0.67
SHMT2-222	ENST00000555774		F2Z2F3	143 aa		10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	BMPR1B	O00238	502 aa		10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	APCS	P02743	223 aa		10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	CRYGB	P07316	175 aa		10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	RPL27A	P46776	148 aa	Known RBP	10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	TBR1	Q16650	682 aa		10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	TMEM190	Q8WZ59	177 aa		10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	IGHV1-69-2	A0A0G2JMI3	117 aa		10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774		E7EQL1	145 aa		10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	EREG	O14944	169 aa		10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	HIST1H1E	P10412	219 aa	Known RBP	10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	COMP	P49747	757 aa	Predicted RBP	10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	PRRX1	P54821	245 aa		10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	CASP6	P55212	293 aa		10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	NUTF2	P61970	127 aa	Known RBP	10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	MRPL54	Q6P161	138 aa	Known RBP	10.84	□□□□□ -0.67
SHMT2-222	ENST00000555774	DMRTC2	Q8IXT2	367 aa	Predicted RBP	10.84	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms