RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 C15orf62A8K5M9 175 aa10.92□□□□□ -0.66
CCDC88C-207ENST00000554051 F8W735 103 aaPredicted RBP10.92□□□□□ -0.66
CCDC88C-207ENST00000554051 K7EMT4 169 aa10.92□□□□□ -0.66
CCDC88C-207ENST00000554051 PLA2G10O15496 165 aa10.92□□□□□ -0.66
CCDC88C-207ENST00000554051 PITX3O75364 302 aa10.92□□□□□ -0.66
CCDC88C-207ENST00000554051 CBLN1P23435 193 aa10.92□□□□□ -0.66
CCDC88C-207ENST00000554051 DEFB121Q5J5C9 76 aa10.92□□□□□ -0.66
CCDC88C-207ENST00000554051 OR4X1Q8NH49 305 aa10.92□□□□□ -0.66
CCDC88C-207ENST00000554051 B9D2Q9BPU9 175 aa10.92□□□□□ -0.66
CCDC88C-207ENST00000554051 ZC4H2Q9NQZ6 224 aa10.92□□□□□ -0.66
CCDC88C-207ENST00000554051 IGHV3-21A0A0B4J1V1 117 aa10.91□□□□□ -0.66
CCDC88C-207ENST00000554051 TRAV25A0A0B4J276 109 aa10.91□□□□□ -0.66
CCDC88C-207ENST00000554051 FAM240BA0A1B0GVZ2 78 aa10.91□□□□□ -0.66
CCDC88C-207ENST00000554051 UPK1BO75841 260 aa10.91□□□□□ -0.66
CCDC88C-207ENST00000554051 IFNA10P01566 189 aa10.91□□□□□ -0.66
CCDC88C-207ENST00000554051 TCRBP04435 133 aa10.91□□□□□ -0.66
CCDC88C-207ENST00000554051 CTSGP08311 255 aa10.91□□□□□ -0.66
CCDC88C-207ENST00000554051 NUDT15Q9NV35 164 aa10.91□□□□□ -0.66
CCDC88C-207ENST00000554051 LSM4Q9Y4Z0 139 aaKnown RBP10.91□□□□□ -0.66
CCDC88C-207ENST00000554051 CLN5O75503 358 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 CD5P06127 495 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 C8orf88P0DMB2 117 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 ANXA7P20073 488 aaKnown RBP10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 ADMP35318 185 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 DEFA1P59665 94 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 DEFA3P59666 94 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 CD69Q07108 199 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 DEFB114Q30KQ6 69 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 GGNBP1Q5YKI7 109 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 UNQ9165/PRO28630Q6UXU0 137 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 ZNF600Q6ZNG1 722 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 HAPLN4Q86UW8 402 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 ENKURQ8TC29 256 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 MITD1Q8WV92 249 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 CHRDL1Q9BU40 450 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 RBKSQ9H477 322 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 FLVCR2Q9UPI3 526 aa10.9□□□□□ -0.66
CCDC88C-207ENST00000554051 SORL1Q92673 2214 aa10.89□□□□□ -0.67
CCDC88C-207ENST00000554051 HOXB5P09067 269 aa10.89□□□□□ -0.67
CCDC88C-207ENST00000554051 RAB11AP62491 216 aa10.89□□□□□ -0.67
CCDC88C-207ENST00000554051 CD300EQ496F6 205 aaPredicted RBP10.89□□□□□ -0.67
CCDC88C-207ENST00000554051 UXS1Q8NBZ7 420 aa10.89□□□□□ -0.67
CCDC88C-207ENST00000554051 TMEM116Q8NCL8 245 aa10.89□□□□□ -0.67
CCDC88C-207ENST00000554051 OR1S2Q8NGQ3 325 aa10.89□□□□□ -0.67
CCDC88C-207ENST00000554051 OR10C1Q96KK4 312 aa10.89□□□□□ -0.67
CCDC88C-207ENST00000554051 C20orf24Q9BUV8 137 aa10.89□□□□□ -0.67
CCDC88C-207ENST00000554051 A8MZ25 164 aa10.88□□□□□ -0.67
CCDC88C-207ENST00000554051 WRBO00258 174 aa10.88□□□□□ -0.67
CCDC88C-207ENST00000554051 SYNGR2O43760 224 aa10.88□□□□□ -0.67
CCDC88C-207ENST00000554051 YIF1AO95070 293 aa10.88□□□□□ -0.67
CCDC88C-207ENST00000554051 NXPH3O95157 252 aa10.88□□□□□ -0.67
CCDC88C-207ENST00000554051 NHLRC4P0CG21 123 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-207ENST00000554051 LAMTOR1Q6IAA8 161 aa10.88□□□□□ -0.67
CCDC88C-207ENST00000554051 RBPMS2Q6ZRY4 209 aaKnown RBP10.88□□□□□ -0.67
CCDC88C-207ENST00000554051 SLC16A13Q7RTY0 426 aa10.88□□□□□ -0.67
CCDC88C-207ENST00000554051 TMEM231Q9H6L2 316 aa10.88□□□□□ -0.67
CCDC88C-207ENST00000554051 DNAH3Q8TD57 4116 aa10.88□□□□□ -0.67
CCDC88C-207ENST00000554051 IGHV3-35A0A0C4DH35 117 aa10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 IFNA4P05014 189 aa10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 FABP1P07148 127 aa10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 H2AFB2P0C5Z0 115 aa10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 GPX4P36969 197 aaPredicted RBP10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 TM4SF20Q53R12 229 aa10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 BTNL8Q6UX41 500 aa10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 ADAMTSL5Q6ZMM2 481 aa10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 ZNF431Q8TF32 576 aaPredicted RBP10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 CACNG8Q8WXS5 425 aa10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 NARS2Q96I59 477 aaKnown RBP10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 SLC35E1Q96K37 410 aa10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 SPAG8Q99932 426 aaPredicted RBP10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 FNDC4Q9H6D8 234 aaPredicted RBP10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 TBC1D24Q9ULP9 559 aa10.87□□□□□ -0.67
CCDC88C-207ENST00000554051 TRAV6A0A075B6T7 132 aa10.86□□□□□ -0.67
CCDC88C-207ENST00000554051 TMEM50AO95807 157 aa10.86□□□□□ -0.67
CCDC88C-207ENST00000554051 NKX2-1P43699 371 aaPredicted RBP10.86□□□□□ -0.67
CCDC88C-207ENST00000554051 RND2P52198 227 aa10.86□□□□□ -0.67
CCDC88C-207ENST00000554051 GUCA2BQ16661 112 aa10.86□□□□□ -0.67
CCDC88C-207ENST00000554051 PRSS54Q6PEW0 395 aa10.86□□□□□ -0.67
CCDC88C-207ENST00000554051 TMEM61Q8N0U2 210 aa10.86□□□□□ -0.67
CCDC88C-207ENST00000554051 GPN1Q9HCN4 374 aaPredicted RBP10.86□□□□□ -0.67
CCDC88C-207ENST00000554051 MLXQ9UH92 298 aa10.86□□□□□ -0.67
CCDC88C-207ENST00000554051 PUS1Q9Y606 427 aaKnown RBP eCLIP10.86□□□□□ -0.67
CCDC88C-207ENST00000554051 TRAV14DV4A0A0A6YYC5 116 aa10.85□□□□□ -0.67
CCDC88C-207ENST00000554051 IGHV7-4-1A0A0J9YVY3 117 aa10.85□□□□□ -0.67
CCDC88C-207ENST00000554051 TSPAN4O14817 238 aa10.85□□□□□ -0.67
CCDC88C-207ENST00000554051 PRAF2O60831 178 aa10.85□□□□□ -0.67
CCDC88C-207ENST00000554051 ADAP1O75689 374 aa10.85□□□□□ -0.67
CCDC88C-207ENST00000554051 SCAF4O95104 1147 aaKnown RBP10.85□□□□□ -0.67
CCDC88C-207ENST00000554051 IGHV3-48P01763 117 aa10.85□□□□□ -0.67
CCDC88C-207ENST00000554051 NUP62P37198 522 aaPredicted RBP10.85□□□□□ -0.67
CCDC88C-207ENST00000554051 YPEL3P61236 119 aaPredicted RBP10.85□□□□□ -0.67
CCDC88C-207ENST00000554051 IAH1Q2TAA2 248 aaPredicted RBP10.85□□□□□ -0.67
CCDC88C-207ENST00000554051 OR4D5Q8NGN0 318 aa10.85□□□□□ -0.67
CCDC88C-207ENST00000554051 TMEM170AQ8WVE7 144 aa10.85□□□□□ -0.67
CCDC88C-207ENST00000554051 A0A1W2PS18 150 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 OR4C46A6NHA9 309 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 IL5P05113 134 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 IGLC1P0CG04 106 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 OR10J1P30954 320 aa10.84□□□□□ -0.67
CCDC88C-207ENST00000554051 CD81P60033 236 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms