RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 UXS1Q8NBZ7 420 aa10.73□□□□□ -0.69
PTCH1-226ENST00000553011 DUSP18Q8NEJ0 188 aa10.73□□□□□ -0.69
PTCH1-226ENST00000553011 ZNF414Q96IQ9 312 aa10.73□□□□□ -0.69
PTCH1-226ENST00000553011 OR10C1Q96KK4 312 aa10.73□□□□□ -0.69
PTCH1-226ENST00000553011 PRR25Q96S07 402 aa10.73□□□□□ -0.69
PTCH1-226ENST00000553011 TXN2Q99757 166 aa10.73□□□□□ -0.69
PTCH1-226ENST00000553011 ZNF436Q9C0F3 470 aaPredicted RBP10.73□□□□□ -0.69
PTCH1-226ENST00000553011 PRKDCP78527 4128 aaKnown RBP10.72□□□□□ -0.69
PTCH1-226ENST00000553011 TMEM213A2RRL7 107 aa10.72□□□□□ -0.69
PTCH1-226ENST00000553011 C2orf70A6NJV1 201 aa10.72□□□□□ -0.69
PTCH1-226ENST00000553011 NUPL2O15504 423 aaKnown RBP10.72□□□□□ -0.69
PTCH1-226ENST00000553011 SYNGR2O43760 224 aa10.72□□□□□ -0.69
PTCH1-226ENST00000553011 GNG7O60262 68 aa10.72□□□□□ -0.69
PTCH1-226ENST00000553011 MED6O75586 246 aa10.72□□□□□ -0.69
PTCH1-226ENST00000553011 IGLV1-51P01701 117 aa10.72□□□□□ -0.69
PTCH1-226ENST00000553011 SPNP16150 400 aa10.72□□□□□ -0.69
PTCH1-226ENST00000553011 C12orf45Q8N5I9 185 aaPredicted RBP10.72□□□□□ -0.69
PTCH1-226ENST00000553011 OR4D5Q8NGN0 318 aa10.72□□□□□ -0.69
PTCH1-226ENST00000553011 CACNG8Q8WXS5 425 aa10.72□□□□□ -0.69
PTCH1-226ENST00000553011 GAR1Q9NY12 217 aaKnown RBP10.72□□□□□ -0.69
PTCH1-226ENST00000553011 U3KQ87 197 aa10.72□□□□□ -0.69
PTCH1-226ENST00000553011 IGHV3OR16-8A0A075B7F1 116 aa10.71□□□□□ -0.69
PTCH1-226ENST00000553011 A8MWP6 167 aa10.71□□□□□ -0.69
PTCH1-226ENST00000553011 WRBO00258 174 aa10.71□□□□□ -0.69
PTCH1-226ENST00000553011 IL5P05113 134 aa10.71□□□□□ -0.69
PTCH1-226ENST00000553011 FOLR2P14207 255 aa10.71□□□□□ -0.69
PTCH1-226ENST00000553011 NPBWR1P48145 328 aa10.71□□□□□ -0.69
PTCH1-226ENST00000553011 ID3Q02535 119 aa10.71□□□□□ -0.69
PTCH1-226ENST00000553011 IAH1Q2TAA2 248 aaPredicted RBP10.71□□□□□ -0.69
PTCH1-226ENST00000553011 TM4SF20Q53R12 229 aa10.71□□□□□ -0.69
PTCH1-226ENST00000553011 ZBTB8BQ8NAP8 495 aaPredicted RBP10.71□□□□□ -0.69
PTCH1-226ENST00000553011 MRAPQ8TCY5 172 aa10.71□□□□□ -0.69
PTCH1-226ENST00000553011 RNASEH2CQ8TDP1 164 aaKnown RBP10.71□□□□□ -0.69
PTCH1-226ENST00000553011 TMEM190Q8WZ59 177 aa10.71□□□□□ -0.69
PTCH1-226ENST00000553011 SIGLEC8Q9NYZ4 499 aa10.71□□□□□ -0.69
PTCH1-226ENST00000553011 ZMAT5Q9UDW3 170 aaKnown RBP10.71□□□□□ -0.69
PTCH1-226ENST00000553011 ZNF256Q9Y2P7 627 aaPredicted RBP10.71□□□□□ -0.69
PTCH1-226ENST00000553011 SELENOKQ9Y6D0 94 aa10.71□□□□□ -0.69
PTCH1-226ENST00000553011 RPS10-NUDT3A0A1W2PQS6 291 aa10.7□□□□□ -0.7
PTCH1-226ENST00000553011 C15orf62A8K5M9 175 aa10.7□□□□□ -0.7
PTCH1-226ENST00000553011 INMT-MINDY4F8WBC2 141 aa10.7□□□□□ -0.7
PTCH1-226ENST00000553011 NDUFA4O00483 81 aa10.7□□□□□ -0.7
PTCH1-226ENST00000553011 LY86O95711 162 aa10.7□□□□□ -0.7
PTCH1-226ENST00000553011 TMEM50AO95807 157 aa10.7□□□□□ -0.7
PTCH1-226ENST00000553011 NKX2-1P43699 371 aaPredicted RBP10.7□□□□□ -0.7
PTCH1-226ENST00000553011 POLR2GP62487 172 aaKnown RBP eCLIP10.7□□□□□ -0.7
PTCH1-226ENST00000553011 PRSS54Q6PEW0 395 aa10.7□□□□□ -0.7
PTCH1-226ENST00000553011 NOXA1Q86UR1 476 aa10.7□□□□□ -0.7
PTCH1-226ENST00000553011 OR4X1Q8NH49 305 aa10.7□□□□□ -0.7
PTCH1-226ENST00000553011 C20orf24Q9BUV8 137 aa10.7□□□□□ -0.7
PTCH1-226ENST00000553011 PALMDQ9NP74 551 aa10.7□□□□□ -0.7
PTCH1-226ENST00000553011 GSKIPQ9P0R6 139 aa10.7□□□□□ -0.7
PTCH1-226ENST00000553011 IZUMO1RA6ND01 250 aa10.69□□□□□ -0.7
PTCH1-226ENST00000553011 FAM25EA8MYX2 175 aa10.69□□□□□ -0.7
PTCH1-226ENST00000553011 H3BP45 60 aa10.69□□□□□ -0.7
PTCH1-226ENST00000553011 ZNF207O43670 478 aaKnown RBP10.69□□□□□ -0.7
PTCH1-226ENST00000553011 CLN5O75503 358 aa10.69□□□□□ -0.7
PTCH1-226ENST00000553011 SCGB1D2O95969 90 aa10.69□□□□□ -0.7
PTCH1-226ENST00000553011 IFNA4P05014 189 aa10.69□□□□□ -0.7
PTCH1-226ENST00000553011 CBLN1P23435 193 aa10.69□□□□□ -0.7
PTCH1-226ENST00000553011 RND2P52198 227 aa10.69□□□□□ -0.7
PTCH1-226ENST00000553011 RELQ04864 619 aaPredicted RBP10.69□□□□□ -0.7
PTCH1-226ENST00000553011 SLC16A13Q7RTY0 426 aa10.69□□□□□ -0.7
PTCH1-226ENST00000553011 DYNLRB2Q8TF09 96 aa10.69□□□□□ -0.7
PTCH1-226ENST00000553011 CIB3Q96Q77 187 aaPredicted RBP10.69□□□□□ -0.7
PTCH1-226ENST00000553011 MARVELD1Q9BSK0 173 aa10.69□□□□□ -0.7
PTCH1-226ENST00000553011 PAIP2BQ9ULR5 123 aaKnown RBP10.69□□□□□ -0.7
PTCH1-226ENST00000553011 UFC1Q9Y3C8 167 aa10.69□□□□□ -0.7
PTCH1-226ENST00000553011 C5orf51A6NDU8 294 aa10.68□□□□□ -0.7
PTCH1-226ENST00000553011 SSSCA1O60232 199 aa10.68□□□□□ -0.7
PTCH1-226ENST00000553011 YIF1AO95070 293 aa10.68□□□□□ -0.7
PTCH1-226ENST00000553011 SLC25A4P12235 298 aa10.68□□□□□ -0.7
PTCH1-226ENST00000553011 GP9P14770 177 aa10.68□□□□□ -0.7
PTCH1-226ENST00000553011 ELLP55199 621 aaPredicted RBP10.68□□□□□ -0.7
PTCH1-226ENST00000553011 ATP5IP56385 69 aaPredicted RBP10.68□□□□□ -0.7
PTCH1-226ENST00000553011 CD69Q07108 199 aa10.68□□□□□ -0.7
PTCH1-226ENST00000553011 DEFB114Q30KQ6 69 aa10.68□□□□□ -0.7
PTCH1-226ENST00000553011 TIGITQ495A1 244 aa10.68□□□□□ -0.7
PTCH1-226ENST00000553011 CD300EQ496F6 205 aaPredicted RBP10.68□□□□□ -0.7
PTCH1-226ENST00000553011 ETFRF1Q6IPR1 90 aa10.68□□□□□ -0.7
PTCH1-226ENST00000553011 GPN1Q9HCN4 374 aaPredicted RBP10.68□□□□□ -0.7
PTCH1-226ENST00000553011 PRAF2O60831 178 aa10.67□□□□□ -0.7
PTCH1-226ENST00000553011 IGKV1-17P01599 117 aa10.67□□□□□ -0.7
PTCH1-226ENST00000553011 C8orf88P0DMB2 117 aa10.67□□□□□ -0.7
PTCH1-226ENST00000553011 RAB11AP62491 216 aa10.67□□□□□ -0.7
PTCH1-226ENST00000553011 DEFB121Q5J5C9 76 aa10.67□□□□□ -0.7
PTCH1-226ENST00000553011 SPANXN5Q5MJ07 72 aa10.67□□□□□ -0.7
PTCH1-226ENST00000553011 ZNF600Q6ZNG1 722 aa10.67□□□□□ -0.7
PTCH1-226ENST00000553011 TMEM116Q8NCL8 245 aa10.67□□□□□ -0.7
PTCH1-226ENST00000553011 NPIPB3Q92617 1050 aa10.67□□□□□ -0.7
PTCH1-226ENST00000553011 ACY3Q96HD9 319 aa10.67□□□□□ -0.7
PTCH1-226ENST00000553011 DAZ1Q9NQZ3 744 aaKnown RBP10.67□□□□□ -0.7
PTCH1-226ENST00000553011 MLXQ9UH92 298 aa10.67□□□□□ -0.7
PTCH1-226ENST00000553011 RCL1Q9Y2P8 373 aaKnown RBP10.67□□□□□ -0.7
PTCH1-226ENST00000553011 PUS1Q9Y606 427 aaKnown RBP eCLIP10.67□□□□□ -0.7
PTCH1-226ENST00000553011 SNRPGP15A8MWD9 76 aa10.66□□□□□ -0.7
PTCH1-226ENST00000553011 MBPP02686 304 aaPredicted RBP10.66□□□□□ -0.7
PTCH1-226ENST00000553011 IGLC1P0CG04 106 aa10.66□□□□□ -0.7
PTCH1-226ENST00000553011 PAX9P55771 341 aa10.66□□□□□ -0.7
PTCH1-226ENST00000553011 LCN12Q6JVE5 192 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms