RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 NANOGP8Q6NSW7 305 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 ZNF773Q6PK81 442 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 FAM19A1Q7Z5A9 133 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 LINC00471Q8N535 108 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 DEFB125Q8N687 156 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 CASTOR1Q8WTX7 329 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 TWIST2Q8WVJ9 160 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 ITFG2Q969R8 447 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 PPP1R14BQ96C90 147 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 MALSU1Q96EH3 234 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 SMIM12Q96EX1 92 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 ZNF799Q96GE5 643 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 SLC25A44Q96H78 314 aaPredicted RBP2.5□□□□□ -2.01
LIMA1-208ENST00000551691 TMEM56Q96MV1 263 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 OR2A7Q96R45 310 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 GGTLC1Q9BX51 225 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 NSRP1Q9H0G5 558 aaKnown RBP2.5□□□□□ -2.01
LIMA1-208ENST00000551691 WFDC10AQ9H1F0 79 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 OR52D1Q9H346 318 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 RPP21Q9H633 154 aaKnown RBP2.5□□□□□ -2.01
LIMA1-208ENST00000551691 FGFR1OP2Q9NVK5 253 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 APLNQ9ULZ1 77 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 NDUFAF1Q9Y375 327 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 PKHD1L1Q86WI1 4243 aa2.5□□□□□ -2.01
LIMA1-208ENST00000551691 IGLV2-18A0A075B6J9 118 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 TRAV36DV7A0A075B6V5 113 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 IGHV6-1A0A0B4J1U7 121 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 TRAV8-2A0A0B4J237 113 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 IZUMO1RA6ND01 250 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 FAM159BA6NKW6 160 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 IQCF6A8MYZ5 107 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 IGLL5B9A064 214 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 C9JQL5 133 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 H3BP45 60 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 CCRL2O00421 344 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 ATP8B1O43520 1251 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 SMIM24O75264 130 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 YIF1AO95070 293 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 CPSF4O95639 269 aaKnown RBP2.49□□□□□ -2.01
LIMA1-208ENST00000551691 MAS1P04201 325 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 SCGB1C2P0DMR2 95 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 SLC2A1P11166 492 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 ZNF823P16415 610 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 ZNF19P17023 458 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 ELK1P19419 428 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 SLC6A1P30531 599 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 FUSP35637 526 aaKnown RBP eCLIP2.49□□□□□ -2.01
LIMA1-208ENST00000551691 CD200P41217 278 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 NUDT2P50583 147 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 PSMD7P51665 324 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 MAGOHP61326 146 aaKnown RBP2.49□□□□□ -2.01
LIMA1-208ENST00000551691 COPZ1P61923 177 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 MRPS25P82663 173 aaKnown RBP2.49□□□□□ -2.01
LIMA1-208ENST00000551691 NDPQ00604 133 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 ENDOGQ14249 297 aaKnown RBP2.49□□□□□ -2.01
LIMA1-208ENST00000551691 OR8G1Q15617 311 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 RNF212Q495C1 297 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 ZNF678Q5SXM1 525 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 Q5VSD8 79 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 FAM27BQ5VT28 67 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 LAMTOR1Q6IAA8 161 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 TTC33Q6PID6 262 aaPredicted RBP2.49□□□□□ -2.01
LIMA1-208ENST00000551691 C3orf62Q6ZUJ4 267 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 FAM231DQ6ZW35 169 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 DPPA2Q7Z7J5 298 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 LYG2Q86SG7 212 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 WDR86Q86TI4 376 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 LYPD6Q86Y78 171 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 PDPNQ86YL7 162 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 ENTHD1Q8IYW4 607 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 CYB561D1Q8N8Q1 229 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 OR10G2Q8NGC3 310 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 SCGB1C1Q8TD33 95 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 ORAOV1Q8WV07 137 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 SLC35G5Q96KT7 338 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 GAFA1Q96PS6 74 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 RBP7Q96R05 134 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 METTL9Q9H1A3 318 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 C12orf10Q9HB07 376 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 ZNF331Q9NQX6 463 aaPredicted RBP2.49□□□□□ -2.01
LIMA1-208ENST00000551691 GUCA1BQ9UMX6 200 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 WSB1Q9Y6I7 421 aa2.49□□□□□ -2.01
LIMA1-208ENST00000551691 IGKV1-27A0A075B6S5 117 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 IGHV3-49A0A0A0MS15 119 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 EXOC1LA0A1B0GW35 172 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 A0A1B0GWA3 101 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 OR2AT4A6NND4 320 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 CD300LBA8K4G0 201 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 ODF3BA8MYP8 253 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 I3L521 148 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 HMGN4O00479 90 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 BPY2O14599 106 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 OR2T1O43869 369 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 ZNF861PO60384 105 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 HPGDSO60760 199 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 SRSF10O75494 262 aaKnown RBP2.48□□□□□ -2.01
LIMA1-208ENST00000551691 CNIH1O95406 144 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 SOX14O95416 240 aa2.48□□□□□ -2.01
LIMA1-208ENST00000551691 MRPL3P09001 348 aaKnown RBP2.48□□□□□ -2.01
LIMA1-208ENST00000551691 LINC00032P0C843 101 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms