RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 Q6ZWC4 215 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 LYG2Q86SG7 212 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 UBAC2Q8NBM4 344 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 OR5H2Q8NGV7 314 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 C20orf24Q9BUV8 137 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 FXYD6Q9H0Q3 95 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 DAZ1Q9NQZ3 744 aaKnown RBP6.26□□□□□ -1.41
USP28-215ENST00000545608 SMPXQ9UHP9 88 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 TBC1D24Q9ULP9 559 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 TP53TG1Q9Y2A0 90 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 LYSTQ99698 3801 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 KIR2DL5BA0A0G2JN68 375 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 KIR2DL5BA0A0G2JPC4 375 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 FAM240BA0A1B0GVZ2 78 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 SCO2A0A1W2PP80 73 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 GPR31O00270 319 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 UBE2CO00762 179 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 LY6G6CO95867 125 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 PRSS3P35030 304 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 ZNF124Q15973 351 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 PHLDA2Q53GA4 152 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 PYDC2Q56P42 97 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 Q56UQ5 140 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 TMEM69Q5SWH9 247 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 CEMP1Q6PRD7 247 aaPredicted RBP6.25□□□□□ -1.41
USP28-215ENST00000545608 CMTM1Q8IZ96 169 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 KIR2DL5AQ8N109 375 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 SAMD12Q8N8I0 201 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 OR5B3Q8NH48 314 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 KIR2DL5BQ8NHK3 375 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 LHFPL5Q8TAF8 219 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 RNF183Q96D59 192 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 ATP6V0BQ99437 205 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 RNF2Q99496 336 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 SRRQ9GZT4 340 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 PRNDQ9UKY0 176 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 HSPB11Q9Y547 144 aa6.25□□□□□ -1.41
USP28-215ENST00000545608 IGHV3-49A0A0A0MS15 119 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 OR4C46A6NHA9 309 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 C15orf61A6NNL5 157 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 C15orf62A8K5M9 175 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 I3L2K1 104 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 CTDSP2O14595 271 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 CHEK1O14757 476 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 IGKV1-39P01597 117 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 IGHV3-48P01763 117 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 IGKV1D-39P04432 117 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 FCGR2BP31994 310 aaPredicted RBP6.24□□□□□ -1.41
USP28-215ENST00000545608 HRH1P35367 487 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 TAS2R46P59540 309 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 RRAS2P62070 204 aaPredicted RBP6.24□□□□□ -1.41
USP28-215ENST00000545608 APRG1Q8IVJ8 170 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 DUSP18Q8NEJ0 188 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 OR1P1Q8NH06 330 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 GPX8Q8TED1 209 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 SLC25A46Q96AG3 418 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 DIRAS2Q96HU8 199 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 SEC22AQ96IW7 307 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 TMEM56Q96MV1 263 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 RHPN1-AS1Q9BWJ2 59 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 MAP6D1Q9H9H5 199 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 TMEM14BQ9NUH8 114 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 FKBP11Q9NYL4 201 aa6.24□□□□□ -1.41
USP28-215ENST00000545608 PLECQ15149 4684 aaKnown RBP6.24□□□□□ -1.41
USP28-215ENST00000545608 IGKV3-7A0A075B6H7 116 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 IGHV3OR16-13A0A075B7E8 117 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 IGHV3-74A0A0B4J1X5 117 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 IGHV7-4-1A0A0J9YVY3 117 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 NUPR2A6NF83 97 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 YIF1AO95070 293 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 MT-CO2P00403 227 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 EIF4EP06730 217 aaKnown RBP6.23□□□□□ -1.41
USP28-215ENST00000545608 TFPI2P48307 235 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 MFAP4P55083 255 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 TSPAN5P62079 268 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 CLLU1Q5K131 121 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 FAM90A2PQ658T7 463 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 TBC1D26Q86UD7 250 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 TMEM116Q8NCL8 245 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 ZNF431Q8TF32 576 aaPredicted RBP6.23□□□□□ -1.41
USP28-215ENST00000545608 GALNT14Q96FL9 552 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 OR10C1Q96KK4 312 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 MED28Q9H204 178 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 COPZ2Q9P299 210 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 V9GYH0 126 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 HYDINQ4G0P3 5121 aa6.23□□□□□ -1.41
USP28-215ENST00000545608 ALMS1Q8TCU4 4167 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 TRAV14DV4A0A0A6YYC5 116 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 KRBOX1C9JBD0 128 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 NUPL2O15504 423 aaKnown RBP6.22□□□□□ -1.41
USP28-215ENST00000545608 ANXA3P12429 323 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 UCP3P55916 312 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 HSPE1P61604 102 aaKnown RBP6.22□□□□□ -1.41
USP28-215ENST00000545608 CTAG1AP78358 180 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 S100A12P80511 92 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 PRCDQ00LT1 54 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 RELQ04864 619 aaPredicted RBP6.22□□□□□ -1.41
USP28-215ENST00000545608 IZUMO4Q1ZYL8 232 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 C4orf46Q504U0 113 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 SPINK9Q5DT21 86 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms