RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CELSR1Q9NYQ6 3014 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 CORTO00230 105 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 KLK10O43240 276 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 MT-CO2P00403 227 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 TFPI2P48307 235 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 CAMPP49913 170 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 WT1-ASQ06250 92 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 ZNF788Q6ZQV5 615 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 IL19Q9UHD0 177 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 FBXL7Q9UJT9 491 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 ANKHD1Q8IWZ3 2542 aaKnown RBP12.2□□□□□ -0.46
USP28-214ENST00000545540 CR1LQ2VPA4 569 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 IGFL2Q6UWQ7 119 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 PRNDQ9UKY0 176 aa12.2□□□□□ -0.46
USP28-214ENST00000545540 ZNF253O75346 499 aa12.19□□□□□ -0.46
USP28-214ENST00000545540 AMTP48728 403 aa12.19□□□□□ -0.46
USP28-214ENST00000545540 YPEL3P61236 119 aaPredicted RBP12.19□□□□□ -0.46
USP28-214ENST00000545540 MAJINQ3KP22 176 aa12.19□□□□□ -0.46
USP28-214ENST00000545540 IBA57Q5T440 356 aaKnown RBP12.19□□□□□ -0.46
USP28-214ENST00000545540 TMEM200BQ69YZ2 307 aa12.19□□□□□ -0.46
USP28-214ENST00000545540 SAP30LQ9HAJ7 183 aa12.19□□□□□ -0.46
USP28-214ENST00000545540 TECRQ9NZ01 308 aaKnown RBP12.19□□□□□ -0.46
USP28-214ENST00000545540 CNTFRP26992 372 aa12.19□□□□□ -0.46
USP28-214ENST00000545540 SLC25A48Q6ZT89 311 aaKnown RBP12.19□□□□□ -0.46
USP28-214ENST00000545540 Q71RC1 249 aaPredicted RBP12.19□□□□□ -0.46
USP28-214ENST00000545540 PAX1P15863 534 aa12.18□□□□□ -0.46
USP28-214ENST00000545540 KIR2DS2P43631 304 aa12.18□□□□□ -0.46
USP28-214ENST00000545540 LCN12Q6JVE5 192 aa12.18□□□□□ -0.46
USP28-214ENST00000545540 IGLV3-9A0A075B6K5 115 aa12.18□□□□□ -0.46
USP28-214ENST00000545540 FAM90A9PA6NNJ1 464 aa12.18□□□□□ -0.46
USP28-214ENST00000545540 CFHR2P36980 270 aa12.18□□□□□ -0.46
USP28-214ENST00000545540 TPPP2P59282 170 aa12.18□□□□□ -0.46
USP28-214ENST00000545540 SLC25A33Q9BSK2 321 aa12.18□□□□□ -0.46
USP28-214ENST00000545540 TBL2Q9Y4P3 447 aaKnown RBP12.18□□□□□ -0.46
USP28-214ENST00000545540 ZFHX3Q15911 3703 aa12.18□□□□□ -0.46
USP28-214ENST00000545540 AREGP15514 252 aa12.18□□□□□ -0.46
USP28-214ENST00000545540 RPL8P62917 257 aaKnown RBP12.18□□□□□ -0.46
USP28-214ENST00000545540 BSPH1Q075Z2 132 aa12.18□□□□□ -0.46
USP28-214ENST00000545540 C2orf88Q9BSF0 95 aa12.18□□□□□ -0.46
USP28-214ENST00000545540 DPRXA6NFQ7 191 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 M0QZ24 198 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 ISLRO14498 428 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 IGLV2-8P01709 118 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 C1orf194Q5T5A4 169 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 TPTE2P1Q5T6R2 138 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 SIGLECL1Q8N7X8 197 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 FLYWCH2Q96CP2 140 aaKnown RBP12.17□□□□□ -0.46
USP28-214ENST00000545540 ZNF25P17030 456 aaPredicted RBP12.17□□□□□ -0.46
USP28-214ENST00000545540 SLAQ13239 276 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 C1orf185Q5T7R7 199 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 PIP4P1Q86T03 277 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 SLC25A2Q9BXI2 301 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 ZNF430Q9H8G1 570 aaPredicted RBP12.17□□□□□ -0.46
USP28-214ENST00000545540 TIMM8BQ9Y5J9 83 aaPredicted RBP12.17□□□□□ -0.46
USP28-214ENST00000545540 hADV38S2A0JD32 116 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 COX7A2P2O60397 106 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 CD69Q07108 199 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 PATE2Q6UY27 113 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 TP73-AS1Q9UF72 201 aa12.17□□□□□ -0.46
USP28-214ENST00000545540 PTPRQQ9UMZ3 2332 aa12.16□□□□□ -0.46
USP28-214ENST00000545540 H0YJW9 148 aa12.16□□□□□ -0.46
USP28-214ENST00000545540 C8orf88P0DMB2 117 aa12.16□□□□□ -0.46
USP28-214ENST00000545540 TNFSF4P23510 183 aa12.16□□□□□ -0.46
USP28-214ENST00000545540 NUTF2P61970 127 aaKnown RBP12.16□□□□□ -0.46
USP28-214ENST00000545540 RBMXL3Q8N7X1 1067 aaKnown RBP12.16□□□□□ -0.46
USP28-214ENST00000545540 OR1B1Q8NGR6 318 aa12.16□□□□□ -0.46
USP28-214ENST00000545540 CGB1A6NKQ9 187 aa12.16□□□□□ -0.46
USP28-214ENST00000545540 ADIPOQQ15848 244 aa12.16□□□□□ -0.46
USP28-214ENST00000545540 PMCHL1Q16048 86 aa12.16□□□□□ -0.46
USP28-214ENST00000545540 TMEM249Q2WGJ8 235 aa12.16□□□□□ -0.46
USP28-214ENST00000545540 A0A1B0GWJ7 208 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 A0A1W2PRD5 423 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 A0A1W2PRF3 423 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 A0A1W2PRM7 423 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 MFAP2P55001 183 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 PRR30Q53SZ7 412 aaPredicted RBP12.15□□□□□ -0.46
USP28-214ENST00000545540 FAM167A-AS1Q96KT0 104 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 ZNF714Q96N38 554 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 DNAJC4Q9NNZ3 241 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 S4R3C0 116 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 TMEM136Q6ZRR5 245 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 SLC35E1Q96K37 410 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 CHD8Q9HCK8 2581 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 TMEM167BQ9NRX6 74 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 AMMECR1Q9Y4X0 333 aaPredicted RBP12.15□□□□□ -0.46
USP28-214ENST00000545540 NCOR2Q9Y618 2525 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 M0R143 59 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 BMPR1BO00238 502 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 APOA2P02652 100 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 ERHP84090 104 aaKnown RBP12.15□□□□□ -0.46
USP28-214ENST00000545540 DNLZQ5SXM8 178 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 FAM222BQ8WU58 562 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 C11orf52Q96A22 123 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 VAMP8Q9BV40 100 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 CDC42EP3Q9UKI2 254 aa12.15□□□□□ -0.46
USP28-214ENST00000545540 A0A0G2JNJ9 132 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 TMEM68Q96MH6 324 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 NRN1Q9NPD7 142 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 Q9UFV3 132 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 SH2D7A6NKC9 451 aaPredicted RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms