RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 CEBPZOSA8MTT3 80 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 OR11H12B2RN74 326 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 TSPAN4O14817 238 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 RNASE2P10153 161 aaKnown RBP8.89□□□□□ -0.99
HDAC4-216ENST00000544989 ADMP35318 185 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 OPRK1P41145 380 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 ATP5IP56385 69 aaPredicted RBP8.89□□□□□ -0.99
HDAC4-216ENST00000544989 UBE2MP61081 183 aaKnown RBP8.89□□□□□ -0.99
HDAC4-216ENST00000544989 SMCO1Q147U7 214 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 RBMS2Q15434 407 aaKnown RBP8.89□□□□□ -0.99
HDAC4-216ENST00000544989 BSXQ3C1V8 233 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 SPINK9Q5DT21 86 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 TRIQKQ629K1 86 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 ETFRF1Q6IPR1 90 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 Q6ZRM9 215 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 OR52B4Q8NGK2 314 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 RNASEH2CQ8TDP1 164 aaKnown RBP8.89□□□□□ -0.99
HDAC4-216ENST00000544989 TMEM230Q96A57 120 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 GPR146Q96CH1 333 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 WDR89Q96FK6 387 aaPredicted RBP8.89□□□□□ -0.99
HDAC4-216ENST00000544989 OR10C1Q96KK4 312 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 TM2D3Q9BRN9 247 aa8.89□□□□□ -0.99
HDAC4-216ENST00000544989 TRAV30A0A087WSZ9 112 aa8.88□□□□□ -0.99
HDAC4-216ENST00000544989 A0A1B0GU03 582 aa8.88□□□□□ -0.99
HDAC4-216ENST00000544989 CENPXA8MT69 81 aa8.88□□□□□ -0.99
HDAC4-216ENST00000544989 YIF1AO95070 293 aa8.88□□□□□ -0.99
HDAC4-216ENST00000544989 SLC25A4P12235 298 aa8.88□□□□□ -0.99
HDAC4-216ENST00000544989 C2orf83Q53S99 150 aa8.88□□□□□ -0.99
HDAC4-216ENST00000544989 NMSQ5H8A3 153 aa8.88□□□□□ -0.99
HDAC4-216ENST00000544989 ZNF600Q6ZNG1 722 aa8.88□□□□□ -0.99
HDAC4-216ENST00000544989 TMED4Q7Z7H5 227 aa8.88□□□□□ -0.99
HDAC4-216ENST00000544989 OR4X1Q8NH49 305 aa8.88□□□□□ -0.99
HDAC4-216ENST00000544989 C7orf50Q9BRJ6 194 aaKnown RBP8.88□□□□□ -0.99
HDAC4-216ENST00000544989 SRRQ9GZT4 340 aa8.88□□□□□ -0.99
HDAC4-216ENST00000544989 U3KQ87 197 aa8.88□□□□□ -0.99
HDAC4-216ENST00000544989 TRAV14DV4A0A0A6YYC5 116 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 IGHV7-4-1A0A0J9YVY3 117 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 OR4C46A6NHA9 309 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 CLN5O75503 358 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 SCAF4O95104 1147 aaKnown RBP8.87□□□□□ -0.99
HDAC4-216ENST00000544989 CD7P09564 240 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 SLC25A6P12236 298 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 CMC4P56277 68 aaPredicted RBP8.87□□□□□ -0.99
HDAC4-216ENST00000544989 SUPT4H1P63272 117 aaKnown RBP8.87□□□□□ -0.99
HDAC4-216ENST00000544989 TNFRSF9Q07011 255 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 HAGHQ16775 308 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 CNPY1Q3B7I2 92 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 CENPSQ8N2Z9 138 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 LRTM2Q8N967 370 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 TMEM116Q8NCL8 245 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 SLC24A4Q8NFF2 622 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 FAM110AQ9BQ89 295 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 TMEM231Q9H6L2 316 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 SRD5A3Q9H8P0 318 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 SMPXQ9UHP9 88 aa8.87□□□□□ -0.99
HDAC4-216ENST00000544989 A0A1W2PS18 150 aa8.86□□□□□ -0.99
HDAC4-216ENST00000544989 C3orf84H3BNL1 204 aa8.86□□□□□ -0.99
HDAC4-216ENST00000544989 TMEM50AO95807 157 aa8.86□□□□□ -0.99
HDAC4-216ENST00000544989 EDN2P20800 178 aa8.86□□□□□ -0.99
HDAC4-216ENST00000544989 VAMP1P23763 118 aa8.86□□□□□ -0.99
HDAC4-216ENST00000544989 PAFAH1B2P68402 229 aa8.86□□□□□ -0.99
HDAC4-216ENST00000544989 LYZL2Q7Z4W2 148 aa8.86□□□□□ -0.99
HDAC4-216ENST00000544989 DEFB125Q8N687 156 aa8.86□□□□□ -0.99
HDAC4-216ENST00000544989 OR1S1Q8NH92 325 aa8.86□□□□□ -0.99
HDAC4-216ENST00000544989 NARS2Q96I59 477 aaKnown RBP8.86□□□□□ -0.99
HDAC4-216ENST00000544989 HSPB7Q9UBY9 170 aa8.86□□□□□ -0.99
HDAC4-216ENST00000544989 TMED3Q9Y3Q3 217 aa8.86□□□□□ -0.99
HDAC4-216ENST00000544989 FAM90A26D6RGX4 464 aa8.85□□□□□ -0.99
HDAC4-216ENST00000544989 CHEK1O14757 476 aa8.85□□□□□ -0.99
HDAC4-216ENST00000544989 MED6O75586 246 aa8.85□□□□□ -0.99
HDAC4-216ENST00000544989 SFT2D2O95562 160 aa8.85□□□□□ -0.99
HDAC4-216ENST00000544989 IFNA10P01566 189 aa8.85□□□□□ -0.99
HDAC4-216ENST00000544989 IGHV3-48P01763 117 aa8.85□□□□□ -0.99
HDAC4-216ENST00000544989 NPY1RP25929 384 aa8.85□□□□□ -0.99
HDAC4-216ENST00000544989 RPP30P78346 268 aaKnown RBP8.85□□□□□ -0.99
HDAC4-216ENST00000544989 LINC00322Q6ZN03 302 aaPredicted RBP8.85□□□□□ -0.99
HDAC4-216ENST00000544989 OR1S2Q8NGQ3 325 aa8.85□□□□□ -0.99
HDAC4-216ENST00000544989 DTD1Q8TEA8 209 aa8.85□□□□□ -0.99
HDAC4-216ENST00000544989 CITED4Q96RK1 184 aa8.85□□□□□ -0.99
HDAC4-216ENST00000544989 RHPN1-AS1Q9BWJ2 59 aa8.85□□□□□ -0.99
HDAC4-216ENST00000544989 PUS1Q9Y606 427 aaKnown RBP eCLIP8.85□□□□□ -0.99
HDAC4-216ENST00000544989 ZNF207O43670 478 aaKnown RBP8.84□□□□□ -0.99
HDAC4-216ENST00000544989 NDUFB6O95139 128 aa8.84□□□□□ -0.99
HDAC4-216ENST00000544989 TOMM20LQ6UXN7 152 aa8.84□□□□□ -0.99
HDAC4-216ENST00000544989 LINC00299Q6ZSB3 139 aa8.84□□□□□ -0.99
HDAC4-216ENST00000544989 CIB3Q96Q77 187 aaPredicted RBP8.84□□□□□ -0.99
HDAC4-216ENST00000544989 METTL26Q96S19 204 aa8.84□□□□□ -0.99
HDAC4-216ENST00000544989 GGTLC1Q9BX51 225 aa8.84□□□□□ -0.99
HDAC4-216ENST00000544989 FNDC4Q9H6D8 234 aaPredicted RBP8.84□□□□□ -0.99
HDAC4-216ENST00000544989 IGHV3OR16-8A0A075B7F1 116 aa8.83□□□□□ -1
HDAC4-216ENST00000544989 LOC102724200A0A096LPH7 203 aaPredicted RBP8.83□□□□□ -1
HDAC4-216ENST00000544989 NPPCP23582 126 aa8.83□□□□□ -1
HDAC4-216ENST00000544989 EIF2B2P49770 351 aaKnown RBP8.83□□□□□ -1
HDAC4-216ENST00000544989 YPEL3P61236 119 aaPredicted RBP8.83□□□□□ -1
HDAC4-216ENST00000544989 PPP1R1AQ13522 171 aa8.83□□□□□ -1
HDAC4-216ENST00000544989 BAK1Q16611 211 aa8.83□□□□□ -1
HDAC4-216ENST00000544989 COQ8AQ8NI60 647 aa8.83□□□□□ -1
HDAC4-216ENST00000544989 GRAMD2BQ96HH9 432 aa8.83□□□□□ -1
HDAC4-216ENST00000544989 RNF2Q99496 336 aa8.83□□□□□ -1
HDAC4-216ENST00000544989 RBKSQ9H477 322 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 142.1 ms