RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 NHLH1Q02575 133 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 LY6DQ14210 128 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 SLC25A33Q9BSK2 321 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 A0A1W2PRE2 83 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 PHOX2AO14813 284 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 FXYD3Q14802 87 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 IBA57Q5T440 356 aaKnown RBP8.75□□□□□ -1.01
CLIP1-213ENST00000540338 JKAMPQ9P055 326 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 VCANP13611 3396 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 SNURFLB1AK76 121 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 BUB1B-PAK6H3BSN5 160 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 SRSF12Q8WXF0 261 aaKnown RBP8.74□□□□□ -1.01
CLIP1-213ENST00000540338 PRRC2CQ9Y520 2896 aaKnown RBP8.74□□□□□ -1.01
CLIP1-213ENST00000540338 SPTAN1Q13813 2472 aaKnown RBP8.74□□□□□ -1.01
CLIP1-213ENST00000540338 UTF1Q5T230 341 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 OR8I2Q8N0Y5 310 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 CT45A10P0DMU9 189 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 TPPP2P59282 170 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 TMEM249Q2WGJ8 235 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 C8orf31Q8N9H6 132 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 LINC00574Q9H8X3 128 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 YTHDF2Q9Y5A9 579 aaKnown RBP8.74□□□□□ -1.01
CLIP1-213ENST00000540338 DIAPH2-AS1Q14236 149 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 AARDQ4LEZ3 155 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 AAMDCQ9H7C9 122 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 GNB4Q9HAV0 340 aa8.74□□□□□ -1.01
CLIP1-213ENST00000540338 LSM4Q9Y4Z0 139 aaKnown RBP8.74□□□□□ -1.01
CLIP1-213ENST00000540338 ANKHD1Q8IWZ3 2542 aaKnown RBP8.74□□□□□ -1.01
CLIP1-213ENST00000540338 SLC17A3O00476 420 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 TIMM23O14925 209 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 LY6HO94772 140 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 C9orf152Q5JTZ5 239 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 MRPL54Q6P161 138 aaKnown RBP8.73□□□□□ -1.01
CLIP1-213ENST00000540338 TCF23Q7RTU1 214 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 EAF1Q96JC9 268 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-213ENST00000540338 RBM14Q96PK6 669 aaKnown RBP8.73□□□□□ -1.01
CLIP1-213ENST00000540338 CHODLQ9H9P2 273 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 IL36BQ9NZH7 164 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 SIGLECL1Q8N7X8 197 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 SIGLEC9Q9Y336 463 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 NBEAP1P0C6P0 100 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 HIST1H1EP10412 219 aaKnown RBP8.73□□□□□ -1.01
CLIP1-213ENST00000540338 AREGP15514 252 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 CDKN1AP38936 164 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 TEX38Q6PEX7 206 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 RNF5Q99942 180 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 TMUB1Q9BVT8 246 aa8.73□□□□□ -1.01
CLIP1-213ENST00000540338 TLN1Q9Y490 2541 aaKnown RBP8.73□□□□□ -1.01
CLIP1-213ENST00000540338 NDUFS6O75380 124 aaKnown RBP8.72□□□□□ -1.01
CLIP1-213ENST00000540338 FAM106CPP0CH98 169 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 TMEM11P17152 192 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 TMEM183AQ8IXX5 376 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 MS4A10Q96PG2 267 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 WNT10AQ9GZT5 417 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 TRAV5A0A0B4J249 113 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 NBR2O15453 112 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 PFN1P07737 140 aaKnown RBP8.72□□□□□ -1.01
CLIP1-213ENST00000540338 GRNP28799 593 aaKnown RBP8.72□□□□□ -1.01
CLIP1-213ENST00000540338 OR5I1Q13606 314 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 C1orf229Q6ZS94 237 aaPredicted RBP8.72□□□□□ -1.01
CLIP1-213ENST00000540338 BEND2Q8NDZ0 799 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 DYSFO75923 2080 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 A0A1W2PPI3 338 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 SLC35B1P78383 322 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 NHLRC2Q8NBF2 726 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 IMMP2LQ96T52 175 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 LPAR2Q9HBW0 351 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 MT-ND6P03923 174 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 PYYP10082 97 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 TAS2R60P59551 318 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 PRR20EP86478 221 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 PRR20CP86479 221 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 PRR20DP86480 221 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 PRR20BP86481 221 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 PRR20AP86496 221 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 IQCJQ1A5X6 159 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 ARL2-SNX15V9GYD0 113 aa8.72□□□□□ -1.01
CLIP1-213ENST00000540338 C9JCJ5 164 aa8.71□□□□□ -1.01
CLIP1-213ENST00000540338 WT1-ASQ06250 92 aa8.71□□□□□ -1.01
CLIP1-213ENST00000540338 TPTE2P1Q5T6R2 138 aa8.71□□□□□ -1.01
CLIP1-213ENST00000540338 BPIFA4PQ86YQ2 179 aa8.71□□□□□ -1.01
CLIP1-213ENST00000540338 TMEM170AQ8WVE7 144 aa8.71□□□□□ -1.01
CLIP1-213ENST00000540338 TPPP3Q9BW30 176 aa8.71□□□□□ -1.01
CLIP1-213ENST00000540338 ZNF586Q9NXT0 402 aa8.71□□□□□ -1.01
CLIP1-213ENST00000540338 TRAV9-1A0A075B6T8 112 aa8.71□□□□□ -1.02
CLIP1-213ENST00000540338 CHEK1O14757 476 aa8.71□□□□□ -1.02
CLIP1-213ENST00000540338 P01737 135 aa8.71□□□□□ -1.02
CLIP1-213ENST00000540338 MFAP4P55083 255 aa8.71□□□□□ -1.02
CLIP1-213ENST00000540338 DLX1P56177 255 aa8.71□□□□□ -1.02
CLIP1-213ENST00000540338 FOXL1Q12952 345 aa8.71□□□□□ -1.02
CLIP1-213ENST00000540338 MRPL18Q9H0U6 180 aaKnown RBP8.71□□□□□ -1.02
CLIP1-213ENST00000540338 ABCA1O95477 2261 aa8.71□□□□□ -1.02
CLIP1-213ENST00000540338 TRAV30A0A087WSZ9 112 aa8.71□□□□□ -1.02
CLIP1-213ENST00000540338 PEX7O00628 323 aa8.71□□□□□ -1.02
CLIP1-213ENST00000540338 TIMM8BQ9Y5J9 83 aaPredicted RBP8.71□□□□□ -1.02
CLIP1-213ENST00000540338 H3BTX0 84 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 ZNF253O75346 499 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 CD24P25063 80 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 CAMPP49913 170 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 FAM103A1Q9BTL3 118 aaKnown RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms