RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 SRPXP78539 464 aa8.64□□□□□ -1.03
RTN3-209ENST00000538995 KLF9Q13886 244 aaPredicted RBP8.64□□□□□ -1.03
RTN3-209ENST00000538995 Q6ZRM9 215 aa8.64□□□□□ -1.03
RTN3-209ENST00000538995 TMEM230Q96A57 120 aa8.64□□□□□ -1.03
RTN3-209ENST00000538995 GINS3Q9BRX5 216 aa8.64□□□□□ -1.03
RTN3-209ENST00000538995 GGTLC1Q9BX51 225 aa8.64□□□□□ -1.03
RTN3-209ENST00000538995 CACNG5Q9UF02 275 aa8.64□□□□□ -1.03
RTN3-209ENST00000538995 SMPXQ9UHP9 88 aa8.64□□□□□ -1.03
RTN3-209ENST00000538995 SELENOKQ9Y6D0 94 aa8.64□□□□□ -1.03
RTN3-209ENST00000538995 V9GYH0 126 aa8.64□□□□□ -1.03
RTN3-209ENST00000538995 A0A0B4J2A0 478 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 RPS10-NUDT3A0A1W2PQS6 291 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 YIF1AO95070 293 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 CD5P06127 495 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 ANXA3P12429 323 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 LYL1P12980 280 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 TMEM187Q14656 261 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 PYDC2Q56P42 97 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 CASC10Q5T4H9 136 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 ZNF600Q6ZNG1 722 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 CCDC190Q86UF4 302 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 TOMM5Q8N4H5 51 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 TMEM116Q8NCL8 245 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 OR4X1Q8NH49 305 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 GPR146Q96CH1 333 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 SHPKQ9UHJ6 478 aa8.63□□□□□ -1.03
RTN3-209ENST00000538995 IGHV3OR16-8A0A075B7F1 116 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 LOC102724200A0A096LPH7 203 aaPredicted RBP8.62□□□□□ -1.03
RTN3-209ENST00000538995 TRAV14DV4A0A0A6YYC5 116 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 CHEK1O14757 476 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 ZNF207O43670 478 aaKnown RBP8.62□□□□□ -1.03
RTN3-209ENST00000538995 CLN5O75503 358 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 IGHV3-48P01763 117 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 SULT1A3P0DMM9 295 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 SULT1A4P0DMN0 295 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 OPRK1P41145 380 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 ZNF79Q15937 498 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 C2orf83Q53S99 150 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 NMSQ5H8A3 153 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 TOMM20LQ6UXN7 152 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 NOXA1Q86UR1 476 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 SLC24A4Q8NFF2 622 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 RNASEH2CQ8TDP1 164 aaKnown RBP8.62□□□□□ -1.03
RTN3-209ENST00000538995 RHPN1-AS1Q9BWJ2 59 aa8.62□□□□□ -1.03
RTN3-209ENST00000538995 FNDC4Q9H6D8 234 aaPredicted RBP8.62□□□□□ -1.03
RTN3-209ENST00000538995 HEYLQ9NQ87 328 aaPredicted RBP8.62□□□□□ -1.03
RTN3-209ENST00000538995 DYNC2H1Q8NCM8 4307 aaKnown RBP8.62□□□□□ -1.03
RTN3-209ENST00000538995 TRAV30A0A087WSZ9 112 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 DUXBA0A1W2PPF3 345 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 CEBPZOSA8MTT3 80 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 TMEM50AO95807 157 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 SLC25A4P12235 298 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 AKR1C4P17516 323 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 CCR6P51684 374 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 CMC4P56277 68 aaPredicted RBP8.61□□□□□ -1.03
RTN3-209ENST00000538995 SUPT4H1P63272 117 aaKnown RBP8.61□□□□□ -1.03
RTN3-209ENST00000538995 ODF3L2Q3SX64 289 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 SPANXN2Q5MJ10 180 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 LGI3Q8N145 548 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 RNF2Q99496 336 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 SLC25A21Q9BQT8 299 aaPredicted RBP8.61□□□□□ -1.03
RTN3-209ENST00000538995 VSIRQ9H7M9 311 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 ZFAND3Q9H8U3 227 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 RETNQ9HD89 108 aa8.61□□□□□ -1.03
RTN3-209ENST00000538995 PUS1Q9Y606 427 aaKnown RBP eCLIP8.61□□□□□ -1.03
RTN3-209ENST00000538995 APOC4P55056 127 aa8.6□□□□□ -1.03
RTN3-209ENST00000538995 TNFRSF9Q07011 255 aa8.6□□□□□ -1.03
RTN3-209ENST00000538995 SMCO1Q147U7 214 aa8.6□□□□□ -1.03
RTN3-209ENST00000538995 TMEM128Q5BJH2 165 aa8.6□□□□□ -1.03
RTN3-209ENST00000538995 FAM90A2PQ658T7 463 aa8.6□□□□□ -1.03
RTN3-209ENST00000538995 IL17DQ8TAD2 202 aa8.6□□□□□ -1.03
RTN3-209ENST00000538995 TMEM231Q9H6L2 316 aa8.6□□□□□ -1.03
RTN3-209ENST00000538995 HSPB7Q9UBY9 170 aa8.6□□□□□ -1.03
RTN3-209ENST00000538995 STARD9Q9P2P6 4700 aa8.6□□□□□ -1.03
RTN3-209ENST00000538995 CSMD3Q7Z407 3707 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 TRAV2A0A0B4J234 112 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 KIR2DL5BA0A0G2JN68 375 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 KIR2DL5BA0A0G2JPC4 375 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 A0A1B0GU03 582 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 UBE2CO00762 179 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 IGKV1-17P01599 117 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 NPY1RP25929 384 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 ATP5IP56385 69 aaPredicted RBP8.59□□□□□ -1.03
RTN3-209ENST00000538995 PAFAH1B2P68402 229 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 ETFRF1Q6IPR1 90 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 LYZL2Q7Z4W2 148 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 TMED4Q7Z7H5 227 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 KIR2DL5AQ8N109 375 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 LRTM2Q8N967 370 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 OR1S2Q8NGQ3 325 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 KIR2DL5BQ8NHK3 375 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 SRRQ9GZT4 340 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 PRR13Q9NZ81 148 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 MRPL36Q9P0J6 103 aaKnown RBP8.59□□□□□ -1.03
RTN3-209ENST00000538995 UBQLN2Q9UHD9 624 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 TP53TG1Q9Y2A0 90 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 U3KQ87 197 aa8.59□□□□□ -1.03
RTN3-209ENST00000538995 IGHV3-49A0A0A0MS15 119 aa8.58□□□□□ -1.04
RTN3-209ENST00000538995 A0A1W2PS18 150 aa8.58□□□□□ -1.04
RTN3-209ENST00000538995 IGLC1P0CG04 106 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms