RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 BPIFA4PQ86YQ2 179 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 TTC9CQ8N5M4 171 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 TMEM252Q8N6L7 170 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 CNEP1R1Q8N9A8 125 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 GATSQ8NAP1 163 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 OR4F17Q8NGA8 305 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 OR4X2Q8NGF9 303 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 OR9G4Q8NGQ1 327 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 OR4A16Q8NH70 328 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 ATP6V0E2Q8NHE4 81 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 C8orf46Q8TAG6 207 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 ZPLD1Q8TCW7 415 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 RTN4IP1Q8WWV3 396 aaPredicted RBP4.15□□□□□ -1.75
CD44-218ENST00000525469 LHX4Q969G2 390 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 LSM10Q969L4 123 aaKnown RBP4.15□□□□□ -1.75
CD44-218ENST00000525469 GALMQ96C23 342 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 HARBI1Q96MB7 349 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 TSSK2Q96PF2 358 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 OR4F4Q96R69 305 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 C1orf43Q9BWL3 253 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 TMEM126AQ9H061 195 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 PARP12Q9H0J9 701 aaKnown RBP4.15□□□□□ -1.75
CD44-218ENST00000525469 SH3BGRL3Q9H299 93 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 SAP30LQ9HAJ7 183 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 IL36BQ9NZH7 164 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 KLHL13Q9P2N7 655 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 VDAC3Q9Y277 283 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 RCL1Q9Y2P8 373 aaKnown RBP4.15□□□□□ -1.75
CD44-218ENST00000525469 UBE2J1Q9Y385 318 aaPredicted RBP4.15□□□□□ -1.75
CD44-218ENST00000525469 R4GMQ9 66 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 NBEAL2Q6ZNJ1 2754 aa4.15□□□□□ -1.75
CD44-218ENST00000525469 PPIAL4EA0A075B759 164 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 TRAV27A0A087WT01 109 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 PPIAL4CA0A0B4J2A2 164 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 GLOD5A6NK44 160 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 CD300LBA8K4G0 201 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 C9JCJ5 164 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 ZNF878C9JN71 531 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 FAM90A26D6RGX4 464 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 PPIAL4DF5H284 164 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 IFNL4K9M1U5 179 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 F2RL2O00254 374 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 FCN1O00602 326 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 HSBP1O75506 76 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 PLAUP00749 431 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 TGFAP01135 160 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 GYPBP06028 91 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 WNT2P09544 360 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 PPIAL4FP0DN26 164 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 FUT1P19526 365 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 COX5AP20674 150 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 VDAC1P21796 283 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 LOXP28300 417 aaPredicted RBP4.14□□□□□ -1.75
CD44-218ENST00000525469 S100A7P31151 101 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 LHX2P50458 406 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 HERV-K104P61576 105 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 ZNF90Q03938 601 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 SRYQ05066 204 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 TMEM187Q14656 261 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 SRSF7Q16629 238 aaKnown RBP eCLIP4.14□□□□□ -1.75
CD44-218ENST00000525469 WDR38Q5JTN6 314 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 TIMM23BQ5SRD1 257 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 MRPL2Q5T653 305 aaKnown RBP4.14□□□□□ -1.75
CD44-218ENST00000525469 LYRM7Q5U5X0 104 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 TRAT1Q6PIZ9 186 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 ZNF695Q8IW36 515 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 TMEM123Q8N131 208 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 TMEM256Q8N2U0 113 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 LRRC25Q8N386 305 aaPredicted RBP4.14□□□□□ -1.75
CD44-218ENST00000525469 OR2Z1Q8NG97 314 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 OR2AJ1Q8NGZ0 328 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 C18orf32Q8TCD1 76 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 BLNKQ8WV28 456 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 HOXB13Q92826 284 aaPredicted RBP4.14□□□□□ -1.75
CD44-218ENST00000525469 SDF2Q99470 211 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 TMEM70Q9BUB7 260 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 ANXA10Q9UJ72 324 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 ERG28Q9UKR5 140 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 ZNF257Q9Y2Q1 563 aa4.14□□□□□ -1.75
CD44-218ENST00000525469 YTHDF2Q9Y5A9 579 aaKnown RBP4.14□□□□□ -1.75
CD44-218ENST00000525469 IGKV1-8A0A0C4DH67 115 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 A0A1B0GW15 77 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 A4D1N5 150 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 LRRC3CA6NJW4 275 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.13□□□□□ -1.75
CD44-218ENST00000525469 PRKNO60260 465 aaPredicted RBP4.13□□□□□ -1.75
CD44-218ENST00000525469 NDUFS7O75251 213 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 MPDU1O75352 247 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 LYPD3O95274 346 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 GPR75O95800 540 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 MT-ATP6P00846 226 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 C3orf79P0CE67 100 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 HIST1H1EP10412 219 aaKnown RBP4.13□□□□□ -1.75
CD44-218ENST00000525469 HLA-DOBP13765 273 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 ZNF823P16415 610 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 HTR1DP28221 377 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 GPR183P32249 361 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 DYNLT3P51808 116 aa4.13□□□□□ -1.75
CD44-218ENST00000525469 GRB2P62993 217 aaKnown RBP4.13□□□□□ -1.75
CD44-218ENST00000525469 CCL20P78556 96 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms