RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 NEU4Q8WWR8 484 aaPredicted RBP8.37□□□□□ -1.07
PDGFRB-207ENST00000520579 TMEM54Q969K7 222 aa8.37□□□□□ -1.07
PDGFRB-207ENST00000520579 F11RQ9Y624 299 aaKnown RBP8.37□□□□□ -1.07
PDGFRB-207ENST00000520579 TRBV20-1A0A075B6N2 111 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 APELAP0DMC3 54 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 YPEL3P61236 119 aaPredicted RBP8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 NEGR1Q7Z3B1 354 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 BPIFA4PQ86YQ2 179 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 ABHD17AQ96GS6 310 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 PRDM6Q9NQX0 595 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 TRAV5A0A0B4J249 113 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 A0A1W2PRD5 423 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 A0A1W2PRF3 423 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 A0A1W2PRM7 423 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 ZNF503-AS2A6NEH8 195 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 FAM90A27PA6NNH2 459 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 K7EMI3 77 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 CEACAM4O75871 244 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 ARG2P78540 354 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 PLP2Q04941 152 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 FOXE3Q13461 319 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 CYSLTR1Q9Y271 337 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 EPOPA6NHQ4 379 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 GPR183P32249 361 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 LTBRP36941 435 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 C10orf128Q5T292 105 aa8.36□□□□□ -1.07
PDGFRB-207ENST00000520579 LINC00473A8K010 186 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 IGLV2-14P01704 120 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 CFIP05156 583 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 ZBTB34Q8NCN2 500 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 VSTM2AQ8TAG5 236 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 LSM10Q969L4 123 aaKnown RBP8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 MGST2Q99735 147 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 INSIG2Q9Y5U4 225 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 CHCHD2Q9Y6H1 151 aaPredicted RBP8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 FAM181BA6NEQ2 426 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 LILRA5A6NI73 299 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 CXorf1O96002 111 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 MT-CO3P00414 261 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 PRTN3P24158 256 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 RPL39P5Q59GN2 51 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 TMEM136Q6ZRR5 245 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 OR5A1Q8NGJ0 315 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 NBASA2RRP1 2371 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 LOC102723996A0A087X1L8 192 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 C15orf62A8K5M9 175 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 GNG5P63218 68 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 GUSBP11Q6P575 273 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 RPS19BP1Q86WX3 136 aaKnown RBP8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 OCIAD1Q9NX40 245 aa8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 CNOT1A5YKK6 2376 aaKnown RBP8.35□□□□□ -1.07
PDGFRB-207ENST00000520579 ZGRF1Q86YA3 2104 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 IGHV3-21A0A0B4J1V1 117 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 LAMTOR5O43504 91 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 HBZP02008 142 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 LYSMD4Q5XG99 296 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 TREML4Q6UXN2 200 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 TEX45Q8NA69 505 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 C10orf35Q96D05 121 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 TAAR6Q96RI8 345 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 ONECUT1Q9UBC0 465 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 ERG28Q9UKR5 140 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 PSMB11A5LHX3 300 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 C12orf77C9JDV5 145 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 CHEK1O14757 476 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 P04436 131 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 PCBD1P61457 104 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 CENPVQ7Z7K6 275 aaPredicted RBP8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 C18orf32Q8TCD1 76 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 SPSB4Q96A44 273 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 V9GYV3 84 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 NAV3Q8IVL0 2385 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 KLK10O43240 276 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 LIFP15018 202 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 GLRXP35754 106 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 MRPL23Q16540 153 aaKnown RBP8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 GGTLC1Q9BX51 225 aa8.34□□□□□ -1.07
PDGFRB-207ENST00000520579 TRAV25A0A0B4J276 109 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 PSPNO60542 156 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 AMY1AP04745 511 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 SSR4P51571 173 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 TMEM42Q69YG0 159 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 TEX29Q8N6K0 151 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 PGLYRP4Q96LB8 373 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 VPREB3Q9UKI3 123 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 SPTBN1Q01082 2364 aaKnown RBP8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 LOC389332A0A1B0GUA5 103 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 C9orf118A6NHY6 69 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 LMO7DNF2Z398 122 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 EFNB3Q15768 340 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 C8orf86Q6ZUL3 223 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 OR8A1Q8NGG7 326 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 TRIB1Q96RU8 372 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 JMJD8Q96S16 334 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 METRNQ9UJH8 293 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 ZNF257Q9Y2Q1 563 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 DSCAML1Q8TD84 2053 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 GAGE12JA6NER3 117 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 GAGE7O76087 117 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 GAGE12FP0CL80 117 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 165 ms