RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 CT45A10P0DMU9 189 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 ZNF93P35789 620 aaPredicted RBP4.45□□□□□ -1.7
NUP54-218ENST00000515460 GALR1P47211 349 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 REG1BP48304 166 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 ZNF83P51522 516 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 SLC35B1P78383 322 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 Q0VG73 95 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 PDE7AQ13946 482 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 EDDM3AQ14507 147 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 DEFB113Q30KQ7 82 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 SPANXN4Q5MJ08 99 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 UTF1Q5T230 341 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 SPATA31B1PQ5VZV4 182 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 STUMQ69YW2 141 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 ASPHD2Q6ICH7 369 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 GLIPR1L1Q6UWM5 242 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 Q6ZVH6 145 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 LRRC25Q8N386 305 aaPredicted RBP4.45□□□□□ -1.7
NUP54-218ENST00000515460 Q8N976 141 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 OR51G1Q8NGK1 321 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 OR6N2Q8NGY6 317 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 OR2T10Q8NGZ9 312 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 OR4K13Q8NH42 304 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 ATP6V0E2Q8NHE4 81 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 SGMS2Q8NHU3 365 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 LINC01560Q8TB33 94 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 STAG3L4Q8TBR4 150 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 GMPPAQ96IJ6 420 aaPredicted RBP4.45□□□□□ -1.7
NUP54-218ENST00000515460 SDF2Q99470 211 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 GPER1Q99527 375 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 SPANXDQ9BXN6 97 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 PPDPFQ9H3Y8 114 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 FNDC4Q9H6D8 234 aaPredicted RBP4.45□□□□□ -1.7
NUP54-218ENST00000515460 SDF2L1Q9HCN8 221 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 CMC2Q9NRP2 79 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 ACER3Q9NUN7 267 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 ZNF581Q9P0T4 197 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 OR1A1Q9P1Q5 309 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 IL36RNQ9UBH0 155 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 KLK11Q9UBX7 282 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 OR5V1Q9UGF6 321 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 KCNS2Q9ULS6 477 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 ZNF443Q9Y2A4 671 aaPredicted RBP4.45□□□□□ -1.7
NUP54-218ENST00000515460 CPAMD8Q8IZJ3 1885 aa4.45□□□□□ -1.7
NUP54-218ENST00000515460 SNRNP200O75643 2136 aaKnown RBP4.45□□□□□ -1.7
NUP54-218ENST00000515460 TRAV36DV7A0A075B6V5 113 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 TRBV9A0A0B4J1U6 114 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 TRAV1-1A0A0B4J248 108 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 TRAV8-6A0A0B4J262 113 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 TEX48A0A1B0GUV7 120 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 C7orf71A4D174 169 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 A6NIN4 97 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 NPIPB13A6NJU9 1138 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 NPIPB5A8MRT5 1133 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 ZNF736B4DX44 427 aaPredicted RBP4.44□□□□□ -1.7
NUP54-218ENST00000515460 NPIPB4C9JG80 1138 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 F8W1H4 67 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 RER1O15258 196 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 MOSP00540 346 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 CLPSP04118 112 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 IFNW1P05000 195 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 SPINK8P0C7L1 97 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 ZNF728P0DKX0 622 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 FCGR2AP12318 317 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 SRIP30626 198 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 TIA1P31483 386 aaKnown RBP eCLIP4.44□□□□□ -1.7
NUP54-218ENST00000515460 ZNF136P52737 540 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 RPS28P62857 69 aaKnown RBP4.44□□□□□ -1.7
NUP54-218ENST00000515460 GNB2P62879 340 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 IGLV3-21P80748 117 aaPredicted RBP4.44□□□□□ -1.7
NUP54-218ENST00000515460 RPL36AP83881 106 aaKnown RBP4.44□□□□□ -1.7
NUP54-218ENST00000515460 GTF3C1Q12789 2109 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 IZUMO4Q1ZYL8 232 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 FBXL19-AS1Q494R0 122 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 ACSF3Q4G176 576 aaPredicted RBP4.44□□□□□ -1.7
NUP54-218ENST00000515460 CLEC12AQ5QGZ9 265 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 VAX1Q5SQQ9 334 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 TRIM40Q6P9F5 258 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 Q6Q795 121 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 PLXDC2Q6UX71 529 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 CYP2G1PQ6ZSU1 146 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 C16orf82Q7Z2V1 217 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 ERASQ7Z444 233 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 ZDHHC23Q8IYP9 409 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 CYB561D1Q8N8Q1 229 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 OR52E2Q8NGJ4 325 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 OR10D3Q8NH80 312 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 ZNRF2Q8NHG8 242 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 VSTM2AQ8TAG5 236 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 TMEM37Q8WXS4 190 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 RNASE6Q93091 150 aaKnown RBP4.44□□□□□ -1.7
NUP54-218ENST00000515460 MRPL24Q96A35 216 aaKnown RBP4.44□□□□□ -1.7
NUP54-218ENST00000515460 SEC22AQ96IW7 307 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 C2orf50Q96LR7 162 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 SPIN2AQ99865 258 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 SPIN2BQ9BPZ2 258 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 LMF2Q9BU23 707 aaKnown RBP4.44□□□□□ -1.7
NUP54-218ENST00000515460 PECRQ9BY49 303 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 ENY2Q9NPA8 101 aa4.44□□□□□ -1.7
NUP54-218ENST00000515460 MANBALQ9NQG1 85 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms