RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ZNF716A6NP11 495 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 TNFRSF13BO14836 293 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 CACNG7P62955 275 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 hCG_38984A0A1B0GV85 526 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 A0A1B0GX78 115 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 FOXI1Q12951 378 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 C1orf61Q13536 156 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 TMEM42Q69YG0 159 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 TEX29Q8N6K0 151 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 TMEM54Q969K7 222 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 NABP1Q96AH0 204 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 PRELID3AQ96N28 172 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 AP5S1Q9NUS5 200 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 KMT2EQ8IZD2 1858 aa9.87□□□□□ -0.83
LIMCH1-213ENST00000511496 CSN1S1P47710 185 aa9.87□□□□□ -0.83
LIMCH1-213ENST00000511496 ZFAND6Q6FIF0 208 aa9.87□□□□□ -0.83
LIMCH1-213ENST00000511496 LCNL1Q6ZST4 164 aa9.87□□□□□ -0.83
LIMCH1-213ENST00000511496 F5P12259 2224 aa9.87□□□□□ -0.83
LIMCH1-213ENST00000511496 Q6ZSR3 168 aa9.87□□□□□ -0.83
LIMCH1-213ENST00000511496 PRSS3P2Q8NHM4 247 aa9.87□□□□□ -0.83
LIMCH1-213ENST00000511496 FGFBP3Q8TAT2 258 aa9.87□□□□□ -0.83
LIMCH1-213ENST00000511496 TMEM167BQ9NRX6 74 aa9.87□□□□□ -0.83
LIMCH1-213ENST00000511496 CCDC179H3BU77 68 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 CELA2BP08218 269 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 ZNF32P17041 273 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 IGF2BP2-AS1Q96M15 143 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 ZNF318Q5VUA4 2279 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 MGST3O14880 152 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 TRAV5A0A0B4J249 113 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 IGLL5B9A064 214 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 PRTN3P24158 256 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 FCER1GP30273 86 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 KLRD1Q13241 179 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 FHL3Q13643 280 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 TMEM140Q9NV12 185 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 SDK2Q58EX2 2172 aa9.86□□□□□ -0.83
LIMCH1-213ENST00000511496 TRAV24A0A0B4J272 114 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 LOC389332A0A1B0GUA5 103 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 LTAP01374 205 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 B4GALT1P15291 398 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 MBNL2Q5VZF2 373 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 WFDC3Q8IUB2 231 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 LOXL2Q9Y4K0 774 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 MANSC4A6NHS7 340 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 CRYGSP22914 178 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 ZNF146Q15072 292 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 C2orf27AQ580R0 203 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM234AQ9H0X4 552 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 DLL3Q9NYJ7 618 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A10PA6NDY2 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A18PA6NE21 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 GAGE12JA6NER3 117 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A16PA6NEW6 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A20PA6NIJ5 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A8PA6NJQ4 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A7PA6NKC0 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A22PA8MWA6 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A12PA8MX19 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A5PA8MXJ8 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A23PA8MXZ1 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 M0QXV9 152 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 GAGE7O76087 117 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A15PP0C7V4 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A13PP0C7W8 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A14PP0C7W9 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM90A24PP0C7X0 464 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 GAGE12FP0CL80 117 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 GAGE12GP0CL81 117 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 GAGE12IP0CL82 117 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 GAGE4Q13068 117 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 LILRA6Q6PI73 481 aa9.85□□□□□ -0.83
LIMCH1-213ENST00000511496 WDR87Q6ZQQ6 2873 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 E9PLD3 99 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 ACP1P24666 158 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 SFTA2Q6UW10 78 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 VKORC1L1Q8N0U8 176 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 UCN2Q96RP3 112 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 A0A1B0GXF2 115 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 hADV38S2A0JD32 116 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 SYNGR3O43761 229 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM106CPP0CH98 169 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM106AQ4KMX7 169 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 Q6AWC8 147 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 NABP2Q9BQ15 211 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 CRISPLD2Q9H0B8 497 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 AMMECR1Q9Y4X0 333 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 IGHV3-64DA0A0J9YX35 117 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 PLP2Q04941 152 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 ZNF562Q6V9R5 426 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 PIP4P2Q8N4L2 257 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 PTH2Q96A98 100 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 KIR2DL4Q99706 377 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 FAM173AQ9BQD7 235 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 PPDPFQ9H3Y8 114 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 FZR1Q9UM11 496 aa9.84□□□□□ -0.83
LIMCH1-213ENST00000511496 C2orf16Q68DN1 1984 aa9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 CD27P26842 260 aa9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 GNG3P63215 75 aa9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 C3orf56Q8N813 242 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms