RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 RBPMS2Q6ZRY4 209 aaKnown RBP3.43□□□□□ -1.86
NUP54-206ENST00000508465 ZNF429Q86V71 674 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 SLC25A42Q86VD7 318 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 TMEM229BQ8NBD8 167 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 NECAP1Q8NC96 275 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 MCFD2Q8NI22 146 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 VSTM2AQ8TAG5 236 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 MARCH1Q8TCQ1 289 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 CD300LFQ8TDQ1 290 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 RAB2BQ8WUD1 216 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 TMEM170AQ8WVE7 144 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 DIRAS2Q96HU8 199 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 USMG5Q96IX5 58 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 OR4C12Q96R67 309 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 COMMD5Q9GZQ3 224 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 C6orf62Q9GZU0 229 aaPredicted RBP3.43□□□□□ -1.86
NUP54-206ENST00000508465 SDF2L1Q9HCN8 221 aa3.43□□□□□ -1.86
NUP54-206ENST00000508465 ZNF256Q9Y2P7 627 aaPredicted RBP3.43□□□□□ -1.86
NUP54-206ENST00000508465 LSM4Q9Y4Z0 139 aaKnown RBP3.43□□□□□ -1.86
NUP54-206ENST00000508465 DNAH9Q9NYC9 4486 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 IGHV3OR16-8A0A075B7F1 116 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.42□□□□□ -1.86
NUP54-206ENST00000508465 IGLC7A0M8Q6 106 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 A4D1N5 150 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 FABP12A6NFH5 140 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 MFSD2BA6NFX1 497 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 FAM223BA6NKX1 122 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 GABARAPH6UMI1 98 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 CREBL2O60519 120 aaPredicted RBP3.42□□□□□ -1.86
NUP54-206ENST00000508465 NOL3O60936 208 aaKnown RBP3.42□□□□□ -1.86
NUP54-206ENST00000508465 B3GALNT1O75752 331 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 BRI3O95415 125 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 IGKV1-5P01602 117 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 SERPINE2P07093 398 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 CRYGCP07315 174 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 GP9P14770 177 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 CTRB1P17538 263 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 ZP3P21754 424 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 MFAP2P55001 183 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 PIGPP57054 158 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 WT1-ASQ06250 92 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 IL18Q14116 193 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 POU2AF1Q16633 256 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 TATDN3Q17R31 274 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 RPEL1Q2QD12 228 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 VAX1Q5SQQ9 334 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 CTRB2Q6GPI1 263 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 LPCAT3Q6P1A2 487 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 H2BFWTQ7Z2G1 175 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 LHFPL1Q86WI0 220 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 FAM223AQ8IWN6 122 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 SLC38A6Q8IZM9 456 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 OR9G4Q8NGQ1 327 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 OR1L8Q8NGR8 309 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 OR13C8Q8NGS7 320 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 OR4A16Q8NH70 328 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 OR4A5Q8NH83 315 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 TERB2Q8NHR7 220 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 MRGPRFQ96AM1 343 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 RRNAD1Q96FB5 475 aaKnown RBP3.42□□□□□ -1.86
NUP54-206ENST00000508465 SEC22AQ96IW7 307 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 TP53RKQ96S44 253 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 SOSTQ9BQB4 213 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 RTBDNQ9BSG5 229 aaPredicted RBP3.42□□□□□ -1.86
NUP54-206ENST00000508465 SLIRPQ9GZT3 109 aaKnown RBP3.42□□□□□ -1.86
NUP54-206ENST00000508465 NDUFA4L2Q9NRX3 87 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 BET1LQ9NYM9 111 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 ZMAT5Q9UDW3 170 aaKnown RBP3.42□□□□□ -1.86
NUP54-206ENST00000508465 ZNF257Q9Y2Q1 563 aa3.42□□□□□ -1.86
NUP54-206ENST00000508465 IGLV11-55A0A075B6I3 123 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 TEX13DA0A0J9YY54 714 aaPredicted RBP3.41□□□□□ -1.86
NUP54-206ENST00000508465 C3orf85A0A1B0GTC6 90 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 OR2T8A6NH00 312 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 ZNF207O43670 478 aaKnown RBP3.41□□□□□ -1.86
NUP54-206ENST00000508465 GGCTO75223 188 aaKnown RBP3.41□□□□□ -1.86
NUP54-206ENST00000508465 IGLV1-51P01701 117 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 CD74P04233 296 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 VPREB1P12018 145 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 FOLR2P14207 255 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 S100GP29377 79 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 ETV6P41212 452 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 AMTP48728 403 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 INSL3P51460 131 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 TAS2R19P59542 299 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 TRIM16LQ309B1 348 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 DEFB114Q30KQ6 69 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 PYDC2Q56P42 97 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 NOXA1Q86UR1 476 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 SBSPONQ8IVN8 264 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 UBAC2Q8NBM4 344 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 OR51S1Q8NGJ8 323 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 OR4C16Q8NGL9 310 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 OR6Q1Q8NGQ2 317 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 ZFAND1Q8TCF1 268 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 CACNG8Q8WXS5 425 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 BORCS5Q969J3 196 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 EEF1AKMT3Q96AZ1 226 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 RNF183Q96D59 192 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 B9D2Q9BPU9 175 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 NXF2Q9GZY0 626 aaKnown RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms