RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 SCP2D1Q9UJQ7 156 aa14.41□□□□□ -0.1
USP40-217ENST00000496298 TRAV14DV4A0A0A6YYC5 116 aa14.4□□□□□ -0.1
USP40-217ENST00000496298 YIF1AO95070 293 aa14.4□□□□□ -0.1
USP40-217ENST00000496298 ZNF600Q6ZNG1 722 aa14.4□□□□□ -0.1
USP40-217ENST00000496298 IL22RA2Q969J5 263 aa14.4□□□□□ -0.1
USP40-217ENST00000496298 TMEM230Q96A57 120 aa14.4□□□□□ -0.1
USP40-217ENST00000496298 GPR146Q96CH1 333 aa14.4□□□□□ -0.1
USP40-217ENST00000496298 SCGB3A2Q96PL1 93 aa14.4□□□□□ -0.1
USP40-217ENST00000496298 LYSTQ99698 3801 aa14.4□□□□□ -0.1
USP40-217ENST00000496298 OVOL2Q9BRP0 275 aa14.4□□□□□ -0.1
USP40-217ENST00000496298 FNDC4Q9H6D8 234 aaPredicted RBP14.4□□□□□ -0.1
USP40-217ENST00000496298 ENY2Q9NPA8 101 aa14.4□□□□□ -0.1
USP40-217ENST00000496298 SACSQ9NZJ4 4579 aa14.4□□□□□ -0.1
USP40-217ENST00000496298 TMEM187Q14656 261 aa14.39□□□□□ -0.11
USP40-217ENST00000496298 TMEM268Q5VZI3 342 aa14.39□□□□□ -0.11
USP40-217ENST00000496298 IL17DQ8TAD2 202 aa14.39□□□□□ -0.11
USP40-217ENST00000496298 GINS3Q9BRX5 216 aa14.39□□□□□ -0.11
USP40-217ENST00000496298 VSIRQ9H7M9 311 aa14.39□□□□□ -0.11
USP40-217ENST00000496298 ZFAND3Q9H8U3 227 aa14.39□□□□□ -0.11
USP40-217ENST00000496298 MRPL36Q9P0J6 103 aaKnown RBP14.39□□□□□ -0.11
USP40-217ENST00000496298 UBQLN2Q9UHD9 624 aa14.39□□□□□ -0.11
USP40-217ENST00000496298 KCNIP3Q9Y2W7 256 aa14.39□□□□□ -0.11
USP40-217ENST00000496298 CLN5O75503 358 aa14.38□□□□□ -0.11
USP40-217ENST00000496298 CD5P06127 495 aa14.38□□□□□ -0.11
USP40-217ENST00000496298 HTR2BP41595 481 aa14.38□□□□□ -0.11
USP40-217ENST00000496298 OR4X1Q8NH49 305 aa14.38□□□□□ -0.11
USP40-217ENST00000496298 CACNG5Q9UF02 275 aa14.38□□□□□ -0.11
USP40-217ENST00000496298 CACFD1Q9UGQ2 172 aa14.38□□□□□ -0.11
USP40-217ENST00000496298 IGHV3-49A0A0A0MS15 119 aa14.37□□□□□ -0.11
USP40-217ENST00000496298 KIR2DL5BA0A0G2JN68 375 aa14.37□□□□□ -0.11
USP40-217ENST00000496298 KIR2DL5BA0A0G2JPC4 375 aa14.37□□□□□ -0.11
USP40-217ENST00000496298 A0A1B0GU03 582 aa14.37□□□□□ -0.11
USP40-217ENST00000496298 CMC4P56277 68 aaPredicted RBP14.37□□□□□ -0.11
USP40-217ENST00000496298 MLANAQ16655 118 aa14.37□□□□□ -0.11
USP40-217ENST00000496298 Q6ZWC4 215 aa14.37□□□□□ -0.11
USP40-217ENST00000496298 WFDC3Q8IUB2 231 aa14.37□□□□□ -0.11
USP40-217ENST00000496298 KIR2DL5AQ8N109 375 aa14.37□□□□□ -0.11
USP40-217ENST00000496298 KIR2DL5BQ8NHK3 375 aa14.37□□□□□ -0.11
USP40-217ENST00000496298 TP53TG1Q9Y2A0 90 aa14.37□□□□□ -0.11
USP40-217ENST00000496298 PUS1Q9Y606 427 aaKnown RBP eCLIP14.37□□□□□ -0.11
USP40-217ENST00000496298 LCE6AA0A183 80 aa14.36□□□□□ -0.11
USP40-217ENST00000496298 UBE2CO00762 179 aa14.36□□□□□ -0.11
USP40-217ENST00000496298 APOC4P55056 127 aa14.36□□□□□ -0.11
USP40-217ENST00000496298 SUPT4H1P63272 117 aaKnown RBP14.36□□□□□ -0.11
USP40-217ENST00000496298 KLF9Q13886 244 aaPredicted RBP14.36□□□□□ -0.11
USP40-217ENST00000496298 C2orf83Q53S99 150 aa14.36□□□□□ -0.11
USP40-217ENST00000496298 TRIM63Q969Q1 353 aa14.36□□□□□ -0.11
USP40-217ENST00000496298 HEYLQ9NQ87 328 aaPredicted RBP14.36□□□□□ -0.11
USP40-217ENST00000496298 APOHP02749 345 aaPredicted RBP14.35□□□□□ -0.11
USP40-217ENST00000496298 BMI1P35226 326 aa14.35□□□□□ -0.11
USP40-217ENST00000496298 OPRK1P41145 380 aa14.35□□□□□ -0.11
USP40-217ENST00000496298 NMSQ5H8A3 153 aa14.35□□□□□ -0.11
USP40-217ENST00000496298 LILRB2Q8N423 598 aa14.35□□□□□ -0.11
USP40-217ENST00000496298 ST8SIA2Q92186 375 aa14.35□□□□□ -0.11
USP40-217ENST00000496298 MCUBQ9NWR8 336 aa14.35□□□□□ -0.11
USP40-217ENST00000496298 V9GYH0 126 aa14.35□□□□□ -0.11
USP40-217ENST00000496298 IGHV3OR16-13A0A075B7E8 117 aa14.34□□□□□ -0.11
USP40-217ENST00000496298 TRAV30A0A087WSZ9 112 aa14.34□□□□□ -0.11
USP40-217ENST00000496298 IGHV3-74A0A0B4J1X5 117 aa14.34□□□□□ -0.11
USP40-217ENST00000496298 A0A0B4J2A0 478 aa14.34□□□□□ -0.11
USP40-217ENST00000496298 IGKV1-17P01599 117 aa14.34□□□□□ -0.11
USP40-217ENST00000496298 SULT1A3P0DMM9 295 aa14.34□□□□□ -0.11
USP40-217ENST00000496298 SULT1A4P0DMN0 295 aa14.34□□□□□ -0.11
USP40-217ENST00000496298 TCF24Q7RTU0 167 aa14.34□□□□□ -0.11
USP40-217ENST00000496298 RNASEH2CQ8TDP1 164 aaKnown RBP14.34□□□□□ -0.11
USP40-217ENST00000496298 TMEM170AQ8WVE7 144 aa14.34□□□□□ -0.11
USP40-217ENST00000496298 RBM38Q9H0Z9 239 aaKnown RBP14.34□□□□□ -0.11
USP40-217ENST00000496298 SHPKQ9UHJ6 478 aa14.34□□□□□ -0.11
USP40-217ENST00000496298 TRAV2A0A0B4J234 112 aa14.33□□□□□ -0.12
USP40-217ENST00000496298 RPS10-NUDT3A0A1W2PQS6 291 aa14.33□□□□□ -0.12
USP40-217ENST00000496298 NPPCP23582 126 aa14.33□□□□□ -0.12
USP40-217ENST00000496298 SLC24A4Q8NFF2 622 aa14.33□□□□□ -0.12
USP40-217ENST00000496298 DEDD2Q8WXF8 326 aa14.33□□□□□ -0.12
USP40-217ENST00000496298 MAP6D1Q9H9H5 199 aa14.33□□□□□ -0.12
USP40-217ENST00000496298 PRR13Q9NZ81 148 aa14.33□□□□□ -0.12
USP40-217ENST00000496298 CEBPZOSA8MTT3 80 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 SPRY2O43597 315 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 SCGB2A1O75556 95 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 SLC25A4P12235 298 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 AKR1C4P17516 323 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 CRYBB3P26998 211 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 FAUP35544 74 aaKnown RBP14.32□□□□□ -0.12
USP40-217ENST00000496298 CCR6P51684 374 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 AP3S2P59780 193 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 PAFAH1B2P68402 229 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 SRPXP78539 464 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 ZNF79Q15937 498 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 PYDC2Q56P42 97 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 PRSS54Q6PEW0 395 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 LYZL2Q7Z4W2 148 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 CCDC190Q86UF4 302 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 APRG1Q8IVJ8 170 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 STPG3Q8N7X2 389 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 HSPB7Q9UBY9 170 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 DNAH1Q9P2D7 4330 aa14.32□□□□□ -0.12
USP40-217ENST00000496298 ZNF701M0R085 212 aaPredicted RBP14.31□□□□□ -0.12
USP40-217ENST00000496298 DFFBO76075 338 aa14.31□□□□□ -0.12
USP40-217ENST00000496298 TFPI2P48307 235 aa14.31□□□□□ -0.12
USP40-217ENST00000496298 TNFRSF9Q07011 255 aa14.31□□□□□ -0.12
USP40-217ENST00000496298 SMCO1Q147U7 214 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms