RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 SHPKQ9UHJ6 478 aa18.47■□□□□ 0.55
UPF3A-209ENST00000492270 NBEAL2Q6ZNJ1 2754 aa18.46■□□□□ 0.55
UPF3A-209ENST00000492270 IGHV3-49A0A0A0MS15 119 aa18.46■□□□□ 0.55
UPF3A-209ENST00000492270 RBMY1BA6NDE4 496 aaKnown RBP18.46■□□□□ 0.55
UPF3A-209ENST00000492270 RBMY1EA6NEQ0 496 aaKnown RBP18.46■□□□□ 0.55
UPF3A-209ENST00000492270 RBMY1DP0C7P1 496 aaKnown RBP18.46■□□□□ 0.55
UPF3A-209ENST00000492270 OPRK1P41145 380 aa18.46■□□□□ 0.55
UPF3A-209ENST00000492270 NPBWR1P48145 328 aa18.46■□□□□ 0.55
UPF3A-209ENST00000492270 LGI3Q8N145 548 aa18.46■□□□□ 0.55
UPF3A-209ENST00000492270 OR10C1Q96KK4 312 aa18.46■□□□□ 0.55
UPF3A-209ENST00000492270 IGHV7-4-1A0A0J9YVY3 117 aa18.45■□□□□ 0.54
UPF3A-209ENST00000492270 TMEM50AO95807 157 aa18.45■□□□□ 0.54
UPF3A-209ENST00000492270 ANXA3P12429 323 aa18.45■□□□□ 0.54
UPF3A-209ENST00000492270 DEDD2Q8WXF8 326 aa18.45■□□□□ 0.54
UPF3A-209ENST00000492270 SDHCQ99643 169 aaPredicted RBP18.45■□□□□ 0.54
UPF3A-209ENST00000492270 SMPXQ9UHP9 88 aa18.45■□□□□ 0.54
UPF3A-209ENST00000492270 HTR2BP41595 481 aa18.44■□□□□ 0.54
UPF3A-209ENST00000492270 CCR6P51684 374 aa18.44■□□□□ 0.54
UPF3A-209ENST00000492270 TMEM128Q5BJH2 165 aa18.44■□□□□ 0.54
UPF3A-209ENST00000492270 TOMM20LQ6UXN7 152 aa18.44■□□□□ 0.54
UPF3A-209ENST00000492270 SLC24A4Q8NFF2 622 aa18.44■□□□□ 0.54
UPF3A-209ENST00000492270 TMEM170AQ8WVE7 144 aa18.44■□□□□ 0.54
UPF3A-209ENST00000492270 SLC25A21Q9BQT8 299 aaPredicted RBP18.44■□□□□ 0.54
UPF3A-209ENST00000492270 SPATA25Q9BR10 227 aa18.44■□□□□ 0.54
UPF3A-209ENST00000492270 RETNQ9HD89 108 aa18.44■□□□□ 0.54
UPF3A-209ENST00000492270 IGHV3OR16-13A0A075B7E8 117 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 IGHV3-74A0A0B4J1X5 117 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 TSPAN4O14817 238 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 VAMP1P23763 118 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 SRPXP78539 464 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 SMCO1Q147U7 214 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 ANKRD55Q3KP44 614 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 C2orf83Q53S99 150 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 TRIQKQ629K1 86 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 TMEM116Q8NCL8 245 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 RNF2Q99496 336 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 SPAG8Q99932 426 aaPredicted RBP18.43■□□□□ 0.54
UPF3A-209ENST00000492270 RHPN1-AS1Q9BWJ2 59 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 ZFAND3Q9H8U3 227 aa18.43■□□□□ 0.54
UPF3A-209ENST00000492270 A0A1B0GU03 582 aa18.42■□□□□ 0.54
UPF3A-209ENST00000492270 CHEK1O14757 476 aa18.42■□□□□ 0.54
UPF3A-209ENST00000492270 CLN5O75503 358 aa18.42■□□□□ 0.54
UPF3A-209ENST00000492270 TNFRSF9Q07011 255 aa18.42■□□□□ 0.54
UPF3A-209ENST00000492270 ZNF600Q6ZNG1 722 aa18.42■□□□□ 0.54
UPF3A-209ENST00000492270 CITED4Q96RK1 184 aa18.42■□□□□ 0.54
UPF3A-209ENST00000492270 HSPB7Q9UBY9 170 aa18.42■□□□□ 0.54
UPF3A-209ENST00000492270 UBQLN2Q9UHD9 624 aa18.42■□□□□ 0.54
UPF3A-209ENST00000492270 PUS1Q9Y606 427 aaKnown RBP eCLIP18.42■□□□□ 0.54
UPF3A-209ENST00000492270 INPP1P49441 399 aa18.41■□□□□ 0.54
UPF3A-209ENST00000492270 PPP1R1AQ13522 171 aa18.41■□□□□ 0.54
UPF3A-209ENST00000492270 LAMTOR1Q6IAA8 161 aa18.41■□□□□ 0.54
UPF3A-209ENST00000492270 OR4X1Q8NH49 305 aa18.41■□□□□ 0.54
UPF3A-209ENST00000492270 RBKSQ9H477 322 aa18.41■□□□□ 0.54
UPF3A-209ENST00000492270 TRAV14DV4A0A0A6YYC5 116 aa18.4■□□□□ 0.54
UPF3A-209ENST00000492270 LINC00854A0A1B0GVQ3 168 aa18.4■□□□□ 0.54
UPF3A-209ENST00000492270 NPY1RP25929 384 aa18.4■□□□□ 0.54
UPF3A-209ENST00000492270 RBMS2Q15434 407 aaKnown RBP18.4■□□□□ 0.54
UPF3A-209ENST00000492270 CENPSQ8N2Z9 138 aa18.4■□□□□ 0.54
UPF3A-209ENST00000492270 HIPK2Q9H2X6 1198 aa18.4■□□□□ 0.54
UPF3A-209ENST00000492270 NDUFA13Q9P0J0 144 aa18.4■□□□□ 0.54
UPF3A-209ENST00000492270 SFT2D2O95562 160 aa18.39■□□□□ 0.53
UPF3A-209ENST00000492270 APOHP02749 345 aaPredicted RBP18.39■□□□□ 0.53
UPF3A-209ENST00000492270 OR1S1Q8NH92 325 aa18.39■□□□□ 0.53
UPF3A-209ENST00000492270 DTD1Q8TEA8 209 aa18.39■□□□□ 0.53
UPF3A-209ENST00000492270 FAM110AQ9BQ89 295 aa18.39■□□□□ 0.53
UPF3A-209ENST00000492270 GINS3Q9BRX5 216 aa18.39■□□□□ 0.53
UPF3A-209ENST00000492270 DUXBA0A1W2PPF3 345 aa18.38■□□□□ 0.53
UPF3A-209ENST00000492270 ODF3L2Q3SX64 289 aa18.38■□□□□ 0.53
UPF3A-209ENST00000492270 TIGITQ495A1 244 aa18.38■□□□□ 0.53
UPF3A-209ENST00000492270 PRSS54Q6PEW0 395 aa18.38■□□□□ 0.53
UPF3A-209ENST00000492270 LRTM2Q8N967 370 aa18.38■□□□□ 0.53
UPF3A-209ENST00000492270 RNASEH2CQ8TDP1 164 aaKnown RBP18.38■□□□□ 0.53
UPF3A-209ENST00000492270 ST8SIA2Q92186 375 aa18.38■□□□□ 0.53
UPF3A-209ENST00000492270 IGKV3-7A0A075B6H7 116 aa18.37■□□□□ 0.53
UPF3A-209ENST00000492270 IGHV3-66A0A0C4DH42 116 aa18.37■□□□□ 0.53
UPF3A-209ENST00000492270 RPS10-NUDT3A0A1W2PQS6 291 aa18.37■□□□□ 0.53
UPF3A-209ENST00000492270 IGKV1-17P01599 117 aa18.37■□□□□ 0.53
UPF3A-209ENST00000492270 RND2P52198 227 aa18.37■□□□□ 0.53
UPF3A-209ENST00000492270 LILRB2Q8N423 598 aa18.37■□□□□ 0.53
UPF3A-209ENST00000492270 CACFD1Q9UGQ2 172 aa18.37■□□□□ 0.53
UPF3A-209ENST00000492270 FLVCR2Q9UPI3 526 aa18.37■□□□□ 0.53
UPF3A-209ENST00000492270 KMT2CQ8NEZ4 4911 aaKnown RBP18.37■□□□□ 0.53
UPF3A-209ENST00000492270 NAP1L6A6NFF2 107 aa18.36■□□□□ 0.53
UPF3A-209ENST00000492270 PITX3O75364 302 aa18.36■□□□□ 0.53
UPF3A-209ENST00000492270 NDUFB6O95139 128 aa18.36■□□□□ 0.53
UPF3A-209ENST00000492270 IFNA10P01566 189 aa18.36■□□□□ 0.53
UPF3A-209ENST00000492270 IL7P13232 177 aa18.36■□□□□ 0.53
UPF3A-209ENST00000492270 BTCP35070 178 aa18.36■□□□□ 0.53
UPF3A-209ENST00000492270 MUC7Q8TAX7 377 aa18.36■□□□□ 0.53
UPF3A-209ENST00000492270 EDA2RQ9HAV5 297 aa18.36■□□□□ 0.53
UPF3A-209ENST00000492270 OR4C46A6NHA9 309 aa18.35■□□□□ 0.53
UPF3A-209ENST00000492270 IGLC1P0CG04 106 aa18.35■□□□□ 0.53
UPF3A-209ENST00000492270 TFPI2P48307 235 aa18.35■□□□□ 0.53
UPF3A-209ENST00000492270 FAM90A2PQ658T7 463 aa18.35■□□□□ 0.53
UPF3A-209ENST00000492270 VSIRQ9H7M9 311 aa18.35■□□□□ 0.53
UPF3A-209ENST00000492270 HOXB5P09067 269 aa18.34■□□□□ 0.53
UPF3A-209ENST00000492270 SLC25A4P12235 298 aa18.34■□□□□ 0.53
UPF3A-209ENST00000492270 TCF24Q7RTU0 167 aa18.34■□□□□ 0.53
UPF3A-209ENST00000492270 GBGT1Q8N5D6 347 aa18.34■□□□□ 0.53
UPF3A-209ENST00000492270 GGTLC1Q9BX51 225 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms