RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 CD28P10747 220 aa10.78□□□□□ -0.68
C9orf3-221ENST00000489562 S100A11P31949 105 aa10.78□□□□□ -0.68
C9orf3-221ENST00000489562 FCGR2BP31994 310 aaPredicted RBP10.78□□□□□ -0.68
C9orf3-221ENST00000489562 NPBWR1P48145 328 aa10.78□□□□□ -0.68
C9orf3-221ENST00000489562 MFAP4P55083 255 aa10.78□□□□□ -0.68
C9orf3-221ENST00000489562 ATP6V1FQ16864 119 aa10.78□□□□□ -0.68
C9orf3-221ENST00000489562 KHDC1LQ5JSQ8 128 aa10.78□□□□□ -0.68
C9orf3-221ENST00000489562 LCNL1Q6ZST4 164 aa10.78□□□□□ -0.68
C9orf3-221ENST00000489562 ZNF502Q8TBZ5 544 aa10.78□□□□□ -0.68
C9orf3-221ENST00000489562 SLC35E1Q96K37 410 aa10.78□□□□□ -0.68
C9orf3-221ENST00000489562 FNDC4Q9H6D8 234 aaPredicted RBP10.78□□□□□ -0.68
C9orf3-221ENST00000489562 C21orf62Q9NYP8 219 aa10.78□□□□□ -0.68
C9orf3-221ENST00000489562 TNFSF18Q9UNG2 199 aa10.78□□□□□ -0.68
C9orf3-221ENST00000489562 HSPB11Q9Y547 144 aa10.78□□□□□ -0.68
C9orf3-221ENST00000489562 MFSD2BA6NFX1 497 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 LGALS1P09382 135 aaKnown RBP10.77□□□□□ -0.69
C9orf3-221ENST00000489562 RUNX1Q01196 453 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 DEFA5Q01523 94 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 SLC38A11Q08AI6 406 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 ZNF343Q6P1L6 599 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 ACSM6Q6P461 480 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 C12orf54Q6X4T0 127 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 ACOT7LQ6ZUV0 252 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 NDUFA11Q86Y39 141 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 LILRB2Q8N423 598 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 TMEM116Q8NCL8 245 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 OR1S2Q8NGQ3 325 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 OR4X1Q8NH49 305 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 C4orf3Q8WVX3 66 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 HYLS1Q96M11 299 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 CITED1Q99966 193 aa10.77□□□□□ -0.69
C9orf3-221ENST00000489562 CITED2Q99967 270 aaPredicted RBP10.77□□□□□ -0.69
C9orf3-221ENST00000489562 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.76□□□□□ -0.69
C9orf3-221ENST00000489562 ARPC5O15511 151 aa10.76□□□□□ -0.69
C9orf3-221ENST00000489562 NHLH2Q02577 135 aa10.76□□□□□ -0.69
C9orf3-221ENST00000489562 ZNF345Q14585 488 aa10.76□□□□□ -0.69
C9orf3-221ENST00000489562 ZFP69Q49AA0 526 aa10.76□□□□□ -0.69
C9orf3-221ENST00000489562 HAPLN4Q86UW8 402 aa10.76□□□□□ -0.69
C9orf3-221ENST00000489562 TMEM217Q8N7C4 229 aa10.76□□□□□ -0.69
C9orf3-221ENST00000489562 ZNF747Q9BV97 191 aa10.76□□□□□ -0.69
C9orf3-221ENST00000489562 TMEM147Q9BVK8 224 aa10.76□□□□□ -0.69
C9orf3-221ENST00000489562 MFFQ9GZY8 342 aa10.76□□□□□ -0.69
C9orf3-221ENST00000489562 TRAV30A0A087WSZ9 112 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 IGHV3-21A0A0B4J1V1 117 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 RNF222A6NCQ9 220 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 NUDT19A8MXV4 375 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 GNG7O60262 68 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 CLN5O75503 358 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 DFFBO76075 338 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 IGHV3-11P01762 117 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 RND2P52198 227 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 KRTAP10-3P60369 221 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 AKR1C1Q04828 323 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 ARL16Q0P5N6 197 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 OR2F1Q13607 317 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 GAMTQ14353 236 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 Q56UQ5 140 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 SPSB3Q6PJ21 355 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 C3orf56Q8N813 242 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 C11orf44Q8N8P7 122 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 KLHL30-AS1Q8NEE0 82 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 OR11H4Q8NGC9 324 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 OR5C1Q8NGR4 320 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 BSCL2Q96G97 398 aaPredicted RBP10.75□□□□□ -0.69
C9orf3-221ENST00000489562 CCDC140Q96MF4 163 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 GNB4Q9HAV0 340 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 UQCC1Q9NVA1 299 aa10.75□□□□□ -0.69
C9orf3-221ENST00000489562 A0A0D9SG52 128 aa10.74□□□□□ -0.69
C9orf3-221ENST00000489562 I3L521 148 aa10.74□□□□□ -0.69
C9orf3-221ENST00000489562 CD300CQ08708 224 aa10.74□□□□□ -0.69
C9orf3-221ENST00000489562 MLANAQ16655 118 aa10.74□□□□□ -0.69
C9orf3-221ENST00000489562 VWC2Q2TAL6 325 aa10.74□□□□□ -0.69
C9orf3-221ENST00000489562 SHISA2Q6UWI4 295 aa10.74□□□□□ -0.69
C9orf3-221ENST00000489562 TMEM144Q7Z5S9 345 aa10.74□□□□□ -0.69
C9orf3-221ENST00000489562 UBAC2Q8NBM4 344 aa10.74□□□□□ -0.69
C9orf3-221ENST00000489562 ACY3Q96HD9 319 aa10.74□□□□□ -0.69
C9orf3-221ENST00000489562 NPVFQ9HCQ7 196 aa10.74□□□□□ -0.69
C9orf3-221ENST00000489562 PEF1Q9UBV8 284 aaKnown RBP10.74□□□□□ -0.69
C9orf3-221ENST00000489562 S4R3C0 116 aa10.74□□□□□ -0.69
C9orf3-221ENST00000489562 SMCO3A2RU48 225 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 F8W735 103 aaPredicted RBP10.73□□□□□ -0.69
C9orf3-221ENST00000489562 TAAR5O14804 337 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 NUPL2O15504 423 aaKnown RBP10.73□□□□□ -0.69
C9orf3-221ENST00000489562 TGOLN2O43493 480 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 IGHV3-48P01763 117 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 IGHV3-23P01764 117 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 HSPB1P04792 205 aaKnown RBP10.73□□□□□ -0.69
C9orf3-221ENST00000489562 CLEC3BP05452 202 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 FABP1P07148 127 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 GPR183P32249 361 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 ARL3P36405 182 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 AP2S1P53680 142 aaPredicted RBP10.73□□□□□ -0.69
C9orf3-221ENST00000489562 CLEC19AQ6UXS0 136 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 NPIPB3Q92617 1050 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 OR5B12Q96R08 314 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 ATP5SQ99766 215 aa10.73□□□□□ -0.69
C9orf3-221ENST00000489562 MRPL36Q9P0J6 103 aaKnown RBP10.73□□□□□ -0.69
C9orf3-221ENST00000489562 COL6A5A8TX70 2615 aa10.72□□□□□ -0.69
C9orf3-221ENST00000489562 OR2T8A6NH00 312 aa10.72□□□□□ -0.69
C9orf3-221ENST00000489562 MPDU1O75352 247 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms