RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 FHL3Q13643 280 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 LAMTOR1Q6IAA8 161 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 C19orf35Q6ZS72 473 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 LYG2Q86SG7 212 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 OR2C3Q8N628 320 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 DTD1Q8TEA8 209 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 GPR146Q96CH1 333 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 SLC35E1Q96K37 410 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 TUBA4BQ9H853 241 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 NUDT15Q9NV35 164 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 GSKIPQ9P0R6 139 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 TMEM56-RWDD3S4R434 201 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 ANK2Q01484 3957 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 TRAV30A0A087WSZ9 112 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 IGHV3-35A0A0C4DH35 117 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 SMCO3A2RU48 225 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 TCRBP04435 133 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 GP9P14770 177 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 ANXA7P20073 488 aaKnown RBP6.18□□□□□ -1.42
USP40-216ENST00000485943 PVALBP20472 110 aaPredicted RBP6.18□□□□□ -1.42
USP40-216ENST00000485943 S100A7P31151 101 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 EIF2B2P49770 351 aaKnown RBP6.18□□□□□ -1.42
USP40-216ENST00000485943 MRGPRG-AS1Q2M3A8 158 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 BEAN1Q3B7T3 259 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 ANKRD55Q3KP44 614 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 LYZL2Q7Z4W2 148 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 OR52E5Q8NH55 327 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 SCARB1Q8WTV0 552 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 PPP1R14BQ96C90 147 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 PRR25Q96S07 402 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 TXN2Q99757 166 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 TMEM231Q9H6L2 316 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 AURKAIP1Q9NWT8 199 aaPredicted RBP6.18□□□□□ -1.42
USP40-216ENST00000485943 U3KQ87 197 aa6.18□□□□□ -1.42
USP40-216ENST00000485943 NOTCH3Q9UM47 2321 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 A0A0B4J293 547 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 C9orf170A2RU37 121 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 DBX1A6NMT0 343 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 BMPR1BO00238 502 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 UPK1BO75841 260 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 TRBV12-3P01733 135 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 IGHV3-48P01763 117 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 IAPPP10997 89 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 SLC25A4P12235 298 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 NKX2-1P43699 371 aaPredicted RBP6.17□□□□□ -1.42
USP40-216ENST00000485943 BCAP31P51572 246 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 TNFRSF9Q07011 255 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 KLF5Q13887 457 aaPredicted RBP6.17□□□□□ -1.42
USP40-216ENST00000485943 KIAA0141Q14154 515 aaPredicted RBP6.17□□□□□ -1.42
USP40-216ENST00000485943 PDLIM3Q53GG5 364 aaPredicted RBP6.17□□□□□ -1.42
USP40-216ENST00000485943 CT83Q5H943 113 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 SLC16A13Q7RTY0 426 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 ZNF502Q8TBZ5 544 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 MARC2Q969Z3 335 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 GRAMD2BQ96HH9 432 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 FLVCR2Q9UPI3 526 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 SMAD5-AS1Q9Y6J3 95 aa6.17□□□□□ -1.42
USP40-216ENST00000485943 A0A0G2JRQ6 117 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 SCO2A0A1W2PP80 73 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 A0A1W2PS18 150 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 CGB1A6NKQ9 187 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 ZFP92A6NM28 416 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 FAM90A26D6RGX4 464 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 DNASE2O00115 360 aaPredicted RBP6.16□□□□□ -1.42
USP40-216ENST00000485943 NDUFA4O00483 81 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 FOLR2P14207 255 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 ATP5IP56385 69 aaPredicted RBP6.16□□□□□ -1.42
USP40-216ENST00000485943 S100A10P60903 97 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 PAFAH1B2P68402 229 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 AKR1C1Q04828 323 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 DHRS2Q13268 280 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 IAH1Q2TAA2 248 aaPredicted RBP6.16□□□□□ -1.42
USP40-216ENST00000485943 SPANXN5Q5MJ07 72 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 GGNBP1Q5YKI7 109 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 GSG1LQ6UXU4 331 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 GPHB5Q86YW7 130 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 ZNF114Q8NC26 417 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 LHFPL5Q8TAF8 219 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 RNASEH2CQ8TDP1 164 aaKnown RBP6.16□□□□□ -1.42
USP40-216ENST00000485943 Q8WTZ3 238 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 ACY3Q96HD9 319 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 ATP6V0BQ99437 205 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 RBKSQ9H477 322 aa6.16□□□□□ -1.42
USP40-216ENST00000485943 DAZ1Q9NQZ3 744 aaKnown RBP6.16□□□□□ -1.42
USP40-216ENST00000485943 TECRQ9NZ01 308 aaKnown RBP6.16□□□□□ -1.42
USP40-216ENST00000485943 STRAPQ9Y3F4 350 aaKnown RBP6.16□□□□□ -1.42
USP40-216ENST00000485943 MGAM2Q2M2H8 2515 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 A0A1B0GW64 132 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 C2orf70A6NJV1 201 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 LGALS9O00182 355 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 ZNF207O43670 478 aaKnown RBP6.15□□□□□ -1.42
USP40-216ENST00000485943 SYNGR2O43760 224 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 SSNA1O43805 119 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 SSSCA1O60232 199 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 RLN2P04090 185 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 SLC25A6P12236 298 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 SPNP16150 400 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 RND2P52198 227 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 SUPT4H1P63272 117 aaKnown RBP6.15□□□□□ -1.42
USP40-216ENST00000485943 ASAH1Q13510 395 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms