RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 TSC22D2O75157 780 aa12.73□□□□□ -0.37
TRIM54-203ENST00000485306 DEDDO75618 318 aa12.73□□□□□ -0.37
TRIM54-203ENST00000485306 MPC2O95563 127 aa12.73□□□□□ -0.37
TRIM54-203ENST00000485306 DEFA4P12838 97 aa12.73□□□□□ -0.37
TRIM54-203ENST00000485306 DEFA5Q01523 94 aa12.73□□□□□ -0.37
TRIM54-203ENST00000485306 C2orf83Q53S99 150 aa12.73□□□□□ -0.37
TRIM54-203ENST00000485306 PVRIGQ6DKI7 326 aa12.73□□□□□ -0.37
TRIM54-203ENST00000485306 C11orf87Q6NUJ2 197 aa12.73□□□□□ -0.37
TRIM54-203ENST00000485306 THYN1Q9P016 225 aa12.73□□□□□ -0.37
TRIM54-203ENST00000485306 PEF1Q9UBV8 284 aaKnown RBP12.73□□□□□ -0.37
TRIM54-203ENST00000485306 SCAF4O95104 1147 aaKnown RBP12.72□□□□□ -0.37
TRIM54-203ENST00000485306 IFNA10P01566 189 aa12.72□□□□□ -0.37
TRIM54-203ENST00000485306 RNASE2P10153 161 aaKnown RBP12.72□□□□□ -0.37
TRIM54-203ENST00000485306 IAPPP10997 89 aa12.72□□□□□ -0.37
TRIM54-203ENST00000485306 NPY1RP25929 384 aa12.72□□□□□ -0.37
TRIM54-203ENST00000485306 ZNF343Q6P1L6 599 aa12.72□□□□□ -0.37
TRIM54-203ENST00000485306 PRSS54Q6PEW0 395 aa12.72□□□□□ -0.37
TRIM54-203ENST00000485306 OR2T35Q8NGX2 323 aa12.72□□□□□ -0.37
TRIM54-203ENST00000485306 THAP6Q8TBB0 222 aa12.72□□□□□ -0.37
TRIM54-203ENST00000485306 PSENENQ9NZ42 101 aa12.72□□□□□ -0.37
TRIM54-203ENST00000485306 STRAPQ9Y3F4 350 aaKnown RBP12.72□□□□□ -0.37
TRIM54-203ENST00000485306 COL7A1Q02388 2944 aa12.72□□□□□ -0.37
TRIM54-203ENST00000485306 FAM223BA6NKX1 122 aa12.71□□□□□ -0.37
TRIM54-203ENST00000485306 CCNKO75909 580 aa12.71□□□□□ -0.37
TRIM54-203ENST00000485306 PRH1P02810 166 aa12.71□□□□□ -0.37
TRIM54-203ENST00000485306 RAB11AP62491 216 aa12.71□□□□□ -0.37
TRIM54-203ENST00000485306 ATP5G2Q06055 141 aa12.71□□□□□ -0.37
TRIM54-203ENST00000485306 KLF5Q13887 457 aaPredicted RBP12.71□□□□□ -0.37
TRIM54-203ENST00000485306 LRRC37A5PQ49AS3 106 aa12.71□□□□□ -0.37
TRIM54-203ENST00000485306 FAM223AQ8IWN6 122 aa12.71□□□□□ -0.37
TRIM54-203ENST00000485306 RNASEH2CQ8TDP1 164 aaKnown RBP12.71□□□□□ -0.37
TRIM54-203ENST00000485306 C11orf1Q9H5F2 150 aa12.71□□□□□ -0.37
TRIM54-203ENST00000485306 IGLV11-55A0A075B6I3 123 aa12.7□□□□□ -0.38
TRIM54-203ENST00000485306 TRBV9A0A0B4J1U6 114 aa12.7□□□□□ -0.38
TRIM54-203ENST00000485306 REG1AP05451 166 aa12.7□□□□□ -0.38
TRIM54-203ENST00000485306 LYL1P12980 280 aa12.7□□□□□ -0.38
TRIM54-203ENST00000485306 GP9P14770 177 aa12.7□□□□□ -0.38
TRIM54-203ENST00000485306 P2RY1P47900 373 aa12.7□□□□□ -0.38
TRIM54-203ENST00000485306 PAX9P55771 341 aa12.7□□□□□ -0.38
TRIM54-203ENST00000485306 RHOGP84095 191 aa12.7□□□□□ -0.38
TRIM54-203ENST00000485306 RPEL1Q2QD12 228 aa12.7□□□□□ -0.38
TRIM54-203ENST00000485306 SLC25A24Q6NUK1 477 aa12.7□□□□□ -0.38
TRIM54-203ENST00000485306 AKAP14Q86UN6 197 aa12.7□□□□□ -0.38
TRIM54-203ENST00000485306 NECAP1Q8NC96 275 aa12.7□□□□□ -0.38
TRIM54-203ENST00000485306 WDR89Q96FK6 387 aaPredicted RBP12.7□□□□□ -0.38
TRIM54-203ENST00000485306 LYRM2Q9NU23 88 aaPredicted RBP12.7□□□□□ -0.38
TRIM54-203ENST00000485306 H0YIZ8 118 aa12.69□□□□□ -0.38
TRIM54-203ENST00000485306 TMEM50AO95807 157 aa12.69□□□□□ -0.38
TRIM54-203ENST00000485306 SLC25A4P12235 298 aa12.69□□□□□ -0.38
TRIM54-203ENST00000485306 EXOSC2Q13868 293 aaKnown RBP12.69□□□□□ -0.38
TRIM54-203ENST00000485306 FAM209BQ5JX69 171 aa12.69□□□□□ -0.38
TRIM54-203ENST00000485306 SPANXN5Q5MJ07 72 aa12.69□□□□□ -0.38
TRIM54-203ENST00000485306 TMEM14EPQ6UXP3 125 aa12.69□□□□□ -0.38
TRIM54-203ENST00000485306 TCTE3Q8IZS6 198 aa12.69□□□□□ -0.38
TRIM54-203ENST00000485306 OR9G4Q8NGQ1 327 aa12.69□□□□□ -0.38
TRIM54-203ENST00000485306 ST6GAL2Q96JF0 529 aa12.69□□□□□ -0.38
TRIM54-203ENST00000485306 WWC2-AS2Q96NR7 200 aa12.69□□□□□ -0.38
TRIM54-203ENST00000485306 FANCD2OSQ96PS1 177 aa12.69□□□□□ -0.38
TRIM54-203ENST00000485306 RNF126Q9BV68 326 aa12.69□□□□□ -0.38
TRIM54-203ENST00000485306 TRAV14DV4A0A0A6YYC5 116 aa12.68□□□□□ -0.38
TRIM54-203ENST00000485306 RPS10-NUDT3A0A1W2PQS6 291 aa12.68□□□□□ -0.38
TRIM54-203ENST00000485306 C15orf62A8K5M9 175 aa12.68□□□□□ -0.38
TRIM54-203ENST00000485306 CAV2P51636 162 aa12.68□□□□□ -0.38
TRIM54-203ENST00000485306 SYNJ2BPP57105 145 aa12.68□□□□□ -0.38
TRIM54-203ENST00000485306 C19orf35Q6ZS72 473 aa12.68□□□□□ -0.38
TRIM54-203ENST00000485306 SLC25A31Q9H0C2 315 aa12.68□□□□□ -0.38
TRIM54-203ENST00000485306 OR5AC2Q9NZP5 309 aa12.68□□□□□ -0.38
TRIM54-203ENST00000485306 MBD2Q9UBB5 411 aa12.68□□□□□ -0.38
TRIM54-203ENST00000485306 U3KQK5 164 aa12.68□□□□□ -0.38
TRIM54-203ENST00000485306 OR2J3O76001 311 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 IGLV1-51P01701 117 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 TRBV12-3P01733 135 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 IFNA4P05014 189 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 MFAP2P55001 183 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 ETFRF1Q6IPR1 90 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 TMEM252Q8N6L7 170 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 VN1R17PQ8TDU5 208 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 TMEM170AQ8WVE7 144 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 CXorf58Q96LI9 332 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 ATP6V0BQ99437 205 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 ASCL2Q99929 193 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 PEMTQ9UBM1 199 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 FBXL7Q9UJT9 491 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 DMRT1Q9Y5R6 373 aa12.67□□□□□ -0.38
TRIM54-203ENST00000485306 H3BP45 60 aa12.66□□□□□ -0.38
TRIM54-203ENST00000485306 GPX4P36969 197 aaPredicted RBP12.66□□□□□ -0.38
TRIM54-203ENST00000485306 NUP62P37198 522 aaPredicted RBP12.66□□□□□ -0.38
TRIM54-203ENST00000485306 BAXQ07812 192 aa12.66□□□□□ -0.38
TRIM54-203ENST00000485306 STX12Q86Y82 276 aa12.66□□□□□ -0.38
TRIM54-203ENST00000485306 CACNG8Q8WXS5 425 aa12.66□□□□□ -0.38
TRIM54-203ENST00000485306 MISP3Q96FF7 219 aa12.66□□□□□ -0.38
TRIM54-203ENST00000485306 PAIP2BQ9ULR5 123 aaKnown RBP12.66□□□□□ -0.38
TRIM54-203ENST00000485306 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.65□□□□□ -0.38
TRIM54-203ENST00000485306 FAM24AA6NFZ4 105 aa12.65□□□□□ -0.38
TRIM54-203ENST00000485306 I3L2K1 104 aa12.65□□□□□ -0.38
TRIM54-203ENST00000485306 SULT1A1P50225 295 aa12.65□□□□□ -0.38
TRIM54-203ENST00000485306 C15orf32Q32M92 178 aa12.65□□□□□ -0.38
TRIM54-203ENST00000485306 Q5BKY6 102 aa12.65□□□□□ -0.38
TRIM54-203ENST00000485306 OR10P1Q8NGE3 313 aa12.65□□□□□ -0.38
TRIM54-203ENST00000485306 GGACTQ9BVM4 153 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms