RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 NUDT19A8MXV4 375 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 RPL12P30050 165 aaKnown RBP9.48□□□□□ -0.89
SDC1-206ENST00000482879 GPX4P36969 197 aaPredicted RBP9.48□□□□□ -0.89
SDC1-206ENST00000482879 NUP62P37198 522 aaPredicted RBP9.48□□□□□ -0.89
SDC1-206ENST00000482879 SULT1A1P50225 295 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 MFAP4P55083 255 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 ARL16Q0P5N6 197 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 NSUN5P1Q3KNT7 163 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 ZNF343Q6P1L6 599 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 ACSM6Q6P461 480 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 SLC16A13Q7RTY0 426 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 ZNF546Q86UE3 836 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 HAPLN4Q86UW8 402 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 STX12Q86Y82 276 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 TMEM217Q8N7C4 229 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 KLHL30-AS1Q8NEE0 82 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 ZNF502Q8TBZ5 544 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 CACNG8Q8WXS5 425 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 CITED1Q99966 193 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 TENM1Q9UKZ4 2725 aa9.48□□□□□ -0.89
SDC1-206ENST00000482879 ANKRD34BA5PLL1 514 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 PRSS46E5RG02 174 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 SCAF4O95104 1147 aaKnown RBP9.47□□□□□ -0.89
SDC1-206ENST00000482879 LGALS1P09382 135 aaKnown RBP9.47□□□□□ -0.89
SDC1-206ENST00000482879 EWSR1Q01844 656 aaKnown RBP eCLIP9.47□□□□□ -0.89
SDC1-206ENST00000482879 NHLH2Q02577 135 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 CD300CQ08708 224 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 SLC38A11Q08AI6 406 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 Q56UQ5 140 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 CLEC19AQ6UXS0 136 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 NDUFA11Q86Y39 141 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 UBAC2Q8NBM4 344 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 INO80EQ8NBZ0 244 aaPredicted RBP9.47□□□□□ -0.89
SDC1-206ENST00000482879 C4orf3Q8WVX3 66 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 SLC35E1Q96K37 410 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 CCDC140Q96MF4 163 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 NEURL2Q9BR09 285 aa9.47□□□□□ -0.89
SDC1-206ENST00000482879 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.46□□□□□ -0.9
SDC1-206ENST00000482879 CLEC3BP05452 202 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 S100A11P31949 105 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 NPBWR1P48145 328 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 RND2P52198 227 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 HBG1P69891 147 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 HBG2P69892 147 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 DLK1P80370 383 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 BAXQ07812 192 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 GAMTQ14353 236 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 FAM209BQ5JX69 171 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 ACOT7LQ6ZUV0 252 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 OR11H4Q8NGC9 324 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 OR1S2Q8NGQ3 325 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 OR4X1Q8NH49 305 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 NPIPB3Q92617 1050 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 BSCL2Q96G97 398 aaPredicted RBP9.46□□□□□ -0.9
SDC1-206ENST00000482879 ACY3Q96HD9 319 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 TXN2Q99757 166 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 MRPL36Q9P0J6 103 aaKnown RBP9.46□□□□□ -0.9
SDC1-206ENST00000482879 PEF1Q9UBV8 284 aaKnown RBP9.46□□□□□ -0.9
SDC1-206ENST00000482879 TNFSF18Q9UNG2 199 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 HSPB11Q9Y547 144 aa9.46□□□□□ -0.9
SDC1-206ENST00000482879 SMCO3A2RU48 225 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 OR2T8A6NH00 312 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 ADARB2-AS1A8MUL3 147 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 I3L521 148 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 GNG7O60262 68 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 PFDN1O60925 122 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 TRBV12-3P01733 135 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 FCGR2BP31994 310 aaPredicted RBP9.45□□□□□ -0.9
SDC1-206ENST00000482879 GPR183P32249 361 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 RUNX1Q01196 453 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 ATP6V1FQ16864 119 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 SHISA2Q6UWI4 295 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 C8orf86Q6ZUL3 223 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 LILRB2Q8N423 598 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 TMEM116Q8NCL8 245 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 AQP10Q96PS8 301 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 ATP6V0BQ99437 205 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 GGACTQ9BVM4 153 aa9.45□□□□□ -0.9
SDC1-206ENST00000482879 GAR1Q9NY12 217 aaKnown RBP9.45□□□□□ -0.9
SDC1-206ENST00000482879 HMSDA8MTL9 139 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 PPP5D1E7EU14 171 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 FNDC10F2Z333 226 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 F8W735 103 aaPredicted RBP9.44□□□□□ -0.9
SDC1-206ENST00000482879 ARPC5O15511 151 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 CLN5O75503 358 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 C1QBP02746 253 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 HSPB1P04792 205 aaKnown RBP9.44□□□□□ -0.9
SDC1-206ENST00000482879 ARL3P36405 182 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 AP2S1P53680 142 aaPredicted RBP9.44□□□□□ -0.9
SDC1-206ENST00000482879 AKR1C1Q04828 323 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 CLINT1Q14677 625 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 DEFB136Q30KP8 78 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 OR11H1Q8NG94 326 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 OR5C1Q8NGR4 320 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 OR1N2Q8NGR9 330 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 DPF1Q92782 380 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 SMIM3Q9BZL3 60 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 MFFQ9GZY8 342 aa9.44□□□□□ -0.9
SDC1-206ENST00000482879 IGHV4OR15-8A0A075B7B6 117 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 TRAV30A0A087WSZ9 112 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms