RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 FNDC4Q9H6D8 234 aaPredicted RBP11.05□□□□□ -0.64
LIMS3-204ENST00000482065 PRR13Q9NZ81 148 aa11.05□□□□□ -0.64
LIMS3-204ENST00000482065 CACNG5Q9UF02 275 aa11.05□□□□□ -0.64
LIMS3-204ENST00000482065 DNAH1Q9P2D7 4330 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 CORTO00230 105 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 TMEM50AO95807 157 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 APOHP02749 345 aaPredicted RBP11.04□□□□□ -0.64
LIMS3-204ENST00000482065 RPL35AP18077 110 aaKnown RBP11.04□□□□□ -0.64
LIMS3-204ENST00000482065 OPRK1P41145 380 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 SPCS3P61009 180 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 DHODHQ02127 395 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 ZNF124Q15973 351 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 ZNF600Q6ZNG1 722 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 APRG1Q8IVJ8 170 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 FAM219AQ8IW50 185 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 GBGT1Q8N5D6 347 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 MCFD2Q8NI22 146 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 ST8SIA2Q92186 375 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 TMEM230Q96A57 120 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 SOSTQ9BQB4 213 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 ZFAND3Q9H8U3 227 aa11.04□□□□□ -0.64
LIMS3-204ENST00000482065 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.04□□□□□ -0.64
LIMS3-204ENST00000482065 RSL24D1Q9UHA3 163 aaKnown RBP11.04□□□□□ -0.64
LIMS3-204ENST00000482065 PUS1Q9Y606 427 aaKnown RBP eCLIP11.04□□□□□ -0.64
LIMS3-204ENST00000482065 IGHV3-66A0A0C4DH42 116 aa11.03□□□□□ -0.64
LIMS3-204ENST00000482065 A0A1B0GU03 582 aa11.03□□□□□ -0.64
LIMS3-204ENST00000482065 FABP12A6NFH5 140 aa11.03□□□□□ -0.64
LIMS3-204ENST00000482065 NXPH3O95157 252 aa11.03□□□□□ -0.64
LIMS3-204ENST00000482065 BSXQ3C1V8 233 aa11.03□□□□□ -0.64
LIMS3-204ENST00000482065 AARDQ4LEZ3 155 aa11.03□□□□□ -0.64
LIMS3-204ENST00000482065 FAM90A2PQ658T7 463 aa11.03□□□□□ -0.64
LIMS3-204ENST00000482065 TCF24Q7RTU0 167 aa11.03□□□□□ -0.64
LIMS3-204ENST00000482065 LILRB2Q8N423 598 aa11.03□□□□□ -0.64
LIMS3-204ENST00000482065 GINS3Q9BRX5 216 aa11.03□□□□□ -0.64
LIMS3-204ENST00000482065 MCUBQ9NWR8 336 aa11.03□□□□□ -0.64
LIMS3-204ENST00000482065 CLN5O75503 358 aa11.02□□□□□ -0.65
LIMS3-204ENST00000482065 APOC4P55056 127 aa11.02□□□□□ -0.65
LIMS3-204ENST00000482065 TMEM187Q14656 261 aa11.02□□□□□ -0.65
LIMS3-204ENST00000482065 DEFB135Q30KP9 77 aa11.02□□□□□ -0.65
LIMS3-204ENST00000482065 OR52E5Q8NH55 327 aa11.02□□□□□ -0.65
LIMS3-204ENST00000482065 VSIRQ9H7M9 311 aa11.02□□□□□ -0.65
LIMS3-204ENST00000482065 SCP2D1Q9UJQ7 156 aa11.02□□□□□ -0.65
LIMS3-204ENST00000482065 TMEM56-RWDD3S4R434 201 aa11.02□□□□□ -0.65
LIMS3-204ENST00000482065 CEBPZOSA8MTT3 80 aa11.01□□□□□ -0.65
LIMS3-204ENST00000482065 HTR2BP41595 481 aa11.01□□□□□ -0.65
LIMS3-204ENST00000482065 WFDC3Q8IUB2 231 aa11.01□□□□□ -0.65
LIMS3-204ENST00000482065 OR4X1Q8NH49 305 aa11.01□□□□□ -0.65
LIMS3-204ENST00000482065 IL17DQ8TAD2 202 aa11.01□□□□□ -0.65
LIMS3-204ENST00000482065 HEYLQ9NQ87 328 aaPredicted RBP11.01□□□□□ -0.65
LIMS3-204ENST00000482065 PLECQ15149 4684 aaKnown RBP11.01□□□□□ -0.65
LIMS3-204ENST00000482065 SPRY2O43597 315 aa11□□□□□ -0.65
LIMS3-204ENST00000482065 DFFBO76075 338 aa11□□□□□ -0.65
LIMS3-204ENST00000482065 AKR1C4P17516 323 aa11□□□□□ -0.65
LIMS3-204ENST00000482065 SUPT4H1P63272 117 aaKnown RBP11□□□□□ -0.65
LIMS3-204ENST00000482065 TIGITQ495A1 244 aa11□□□□□ -0.65
LIMS3-204ENST00000482065 Q6ZWC4 215 aa11□□□□□ -0.65
LIMS3-204ENST00000482065 SLC24A4Q8NFF2 622 aa11□□□□□ -0.65
LIMS3-204ENST00000482065 TMEM170AQ8WVE7 144 aa11□□□□□ -0.65
LIMS3-204ENST00000482065 TRIM63Q969Q1 353 aa11□□□□□ -0.65
LIMS3-204ENST00000482065 GALNT14Q96FL9 552 aa11□□□□□ -0.65
LIMS3-204ENST00000482065 MAP6D1Q9H9H5 199 aa11□□□□□ -0.65
LIMS3-204ENST00000482065 KCNIP3Q9Y2W7 256 aa11□□□□□ -0.65
LIMS3-204ENST00000482065 KIR2DL5BA0A0G2JN68 375 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 KIR2DL5BA0A0G2JPC4 375 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 A0A0J9YWU9 116 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 CCDC160A6NGH7 325 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 UBE2CO00762 179 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 IGKV1-17P01599 117 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 SULT1A3P0DMM9 295 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 SULT1A4P0DMN0 295 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 BMI1P35226 326 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 EWSR1Q01844 656 aaKnown RBP eCLIP10.99□□□□□ -0.65
LIMS3-204ENST00000482065 KLF9Q13886 244 aaPredicted RBP10.99□□□□□ -0.65
LIMS3-204ENST00000482065 C2orf83Q53S99 150 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 PYDC2Q56P42 97 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 KIR2DL5AQ8N109 375 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 STPG3Q8N7X2 389 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 KIR2DL5BQ8NHK3 375 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 IL22RA2Q969J5 263 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 SCGB3A2Q96PL1 93 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 MS4A6AQ9H2W1 248 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 TP53TG1Q9Y2A0 90 aa10.99□□□□□ -0.65
LIMS3-204ENST00000482065 RPS10-NUDT3A0A1W2PQS6 291 aa10.98□□□□□ -0.65
LIMS3-204ENST00000482065 NPPCP23582 126 aa10.98□□□□□ -0.65
LIMS3-204ENST00000482065 RND2P52198 227 aa10.98□□□□□ -0.65
LIMS3-204ENST00000482065 RPL11P62913 178 aaKnown RBP10.98□□□□□ -0.65
LIMS3-204ENST00000482065 PAFAH1B2P68402 229 aa10.98□□□□□ -0.65
LIMS3-204ENST00000482065 PRSS54Q6PEW0 395 aa10.98□□□□□ -0.65
LIMS3-204ENST00000482065 LYZL2Q7Z4W2 148 aa10.98□□□□□ -0.65
LIMS3-204ENST00000482065 FAM24BQ8N5W8 94 aa10.98□□□□□ -0.65
LIMS3-204ENST00000482065 RNF183Q96D59 192 aa10.98□□□□□ -0.65
LIMS3-204ENST00000482065 V9GYH0 126 aa10.98□□□□□ -0.65
LIMS3-204ENST00000482065 ALMS1Q8TCU4 4167 aa10.98□□□□□ -0.65
LIMS3-204ENST00000482065 A0A0B4J2A0 478 aa10.97□□□□□ -0.65
LIMS3-204ENST00000482065 DNASE2O00115 360 aaPredicted RBP10.97□□□□□ -0.65
LIMS3-204ENST00000482065 CD5P06127 495 aa10.97□□□□□ -0.65
LIMS3-204ENST00000482065 IGLC1P0CG04 106 aa10.97□□□□□ -0.65
LIMS3-204ENST00000482065 NPY1RP25929 384 aa10.97□□□□□ -0.65
LIMS3-204ENST00000482065 CMC4P56277 68 aaPredicted RBP10.97□□□□□ -0.65
LIMS3-204ENST00000482065 PMS2P11Q13670 270 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms