RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 RASL11BQ9BPW5 248 aa11.22□□□□□ -0.61
USP42-206ENST00000479544 C15orf62A8K5M9 175 aa11.22□□□□□ -0.61
USP42-206ENST00000479544 PEX7O00628 323 aa11.22□□□□□ -0.61
USP42-206ENST00000479544 CKS2P33552 79 aa11.22□□□□□ -0.61
USP42-206ENST00000479544 INO80CQ6PI98 192 aaPredicted RBP11.22□□□□□ -0.61
USP42-206ENST00000479544 ASCL2Q99929 193 aa11.22□□□□□ -0.61
USP42-206ENST00000479544 KLK15Q9H2R5 256 aa11.22□□□□□ -0.61
USP42-206ENST00000479544 IGLV3-32A0A0A0MS00 114 aa11.22□□□□□ -0.61
USP42-206ENST00000479544 GNG7O60262 68 aa11.22□□□□□ -0.61
USP42-206ENST00000479544 NBEAP1P0C6P0 100 aa11.22□□□□□ -0.61
USP42-206ENST00000479544 S100A4P26447 101 aaKnown RBP11.22□□□□□ -0.61
USP42-206ENST00000479544 C10orf55Q5SWW7 151 aa11.22□□□□□ -0.61
USP42-206ENST00000479544 GGNQ86UU5 652 aa11.22□□□□□ -0.61
USP42-206ENST00000479544 ZNF430Q9H8G1 570 aaPredicted RBP11.22□□□□□ -0.61
USP42-206ENST00000479544 FRMD6-AS1P0C7T7 363 aa11.21□□□□□ -0.61
USP42-206ENST00000479544 TMEM97Q5BJF2 176 aa11.21□□□□□ -0.61
USP42-206ENST00000479544 SCGB1D4Q6XE38 83 aa11.21□□□□□ -0.61
USP42-206ENST00000479544 C17orf82Q86X59 251 aaPredicted RBP11.21□□□□□ -0.61
USP42-206ENST00000479544 GNB1LQ9BYB4 327 aa11.21□□□□□ -0.61
USP42-206ENST00000479544 KIF26AQ9ULI4 1882 aaPredicted RBP11.21□□□□□ -0.61
USP42-206ENST00000479544 A0A1W2PS18 150 aa11.21□□□□□ -0.61
USP42-206ENST00000479544 C7orf71A4D174 169 aa11.21□□□□□ -0.61
USP42-206ENST00000479544 IZUMO1RA6ND01 250 aa11.21□□□□□ -0.61
USP42-206ENST00000479544 MBNL2Q5VZF2 373 aaKnown RBP11.21□□□□□ -0.61
USP42-206ENST00000479544 FAM214BQ7L5A3 538 aa11.21□□□□□ -0.61
USP42-206ENST00000479544 ZADH2Q8N4Q0 377 aa11.21□□□□□ -0.61
USP42-206ENST00000479544 C20orf144Q9BQM9 153 aa11.21□□□□□ -0.61
USP42-206ENST00000479544 GAL3ST2Q9H3Q3 398 aa11.21□□□□□ -0.61
USP42-206ENST00000479544 PILRBQ9UKJ0 227 aa11.21□□□□□ -0.61
USP42-206ENST00000479544 DUTP33316 252 aaKnown RBP11.21□□□□□ -0.62
USP42-206ENST00000479544 TWIST1Q15672 202 aa11.21□□□□□ -0.62
USP42-206ENST00000479544 ZCCHC24Q8N2G6 241 aaKnown RBP11.21□□□□□ -0.62
USP42-206ENST00000479544 VSTM2AQ8TAG5 236 aa11.21□□□□□ -0.62
USP42-206ENST00000479544 ZNF703Q9H7S9 590 aaPredicted RBP11.21□□□□□ -0.62
USP42-206ENST00000479544 PPP1R14DQ9NXH3 145 aa11.21□□□□□ -0.62
USP42-206ENST00000479544 PCNX2A6NKB5 2137 aa11.21□□□□□ -0.62
USP42-206ENST00000479544 CIDEAO60543 219 aa11.21□□□□□ -0.62
USP42-206ENST00000479544 TNFRSF1AP19438 455 aa11.21□□□□□ -0.62
USP42-206ENST00000479544 ACP1P24666 158 aa11.21□□□□□ -0.62
USP42-206ENST00000479544 TMEM136Q6ZRR5 245 aa11.21□□□□□ -0.62
USP42-206ENST00000479544 FAM216BQ8N7L0 139 aa11.21□□□□□ -0.62
USP42-206ENST00000479544 RCHY1Q96PM5 261 aa11.21□□□□□ -0.62
USP42-206ENST00000479544 CACNA1AO00555 2505 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 H3BVH4 76 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 DNLZQ5SXM8 178 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 TRAV8-6A0A0B4J262 113 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 LOC107984156A0A0G2JMH3 177 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 A0A1B0GWJ7 208 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 LIPFP07098 398 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 ARL17AQ8IVW1 177 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 OR2T8A6NH00 312 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 IGLC2P0DOY2 106 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 IGLC3P0DOY3 106 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 GPR183P32249 361 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 OR10AG1Q8NH19 301 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 TSKUQ8WUA8 353 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 NUDT11Q96G61 164 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 INSIG2Q9Y5U4 225 aa11.2□□□□□ -0.62
USP42-206ENST00000479544 FOXI3A8MTJ6 420 aaPredicted RBP11.19□□□□□ -0.62
USP42-206ENST00000479544 Q1RN00 199 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 STXBP6Q8NFX7 210 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 SCRT1Q9BWW7 348 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 IGHV3OR16-13A0A075B7E8 117 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 IGHV3-74A0A0B4J1X5 117 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 NPPCP23582 126 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 CEACAM8P31997 349 aaPredicted RBP11.19□□□□□ -0.62
USP42-206ENST00000479544 BHLHA15Q7RTS1 189 aaPredicted RBP11.19□□□□□ -0.62
USP42-206ENST00000479544 OSTCQ9NRP0 149 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 JPT1Q9UK76 154 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 MED12LQ86YW9 2145 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 A0A1W2PRE2 83 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 RPL7P18124 248 aaKnown RBP11.19□□□□□ -0.62
USP42-206ENST00000479544 SRSF9Q13242 221 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP42-206ENST00000479544 NUDT10Q8NFP7 164 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 IFI27L2Q9H2X8 130 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 ONECUT1Q9UBC0 465 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 SLC25A10Q9UBX3 287 aaPredicted RBP11.19□□□□□ -0.62
USP42-206ENST00000479544 HIGD1AQ9Y241 93 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 SPCS1Q9Y6A9 102 aa11.19□□□□□ -0.62
USP42-206ENST00000479544 FAM181BA6NEQ2 426 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 LMO1P25800 156 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 SNRNP40Q96DI7 357 aaKnown RBP11.18□□□□□ -0.62
USP42-206ENST00000479544 A1L4Q6 167 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 ASCL4Q6XD76 172 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 RNASE8Q8TDE3 154 aaKnown RBP11.18□□□□□ -0.62
USP42-206ENST00000479544 TRAV8-1A0A0A6YYK1 113 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 TRAV17A0A0B4J275 112 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 CECR9P0C854 216 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 FCGR2BP31994 310 aaPredicted RBP11.18□□□□□ -0.62
USP42-206ENST00000479544 RPL27AP46776 148 aaKnown RBP11.18□□□□□ -0.62
USP42-206ENST00000479544 SMAGPQ0VAQ4 97 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 GRAMD2BQ96HH9 432 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 COX11Q9Y6N1 276 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 SAA2-SAA4A0A096LPE2 208 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 TYMSP04818 313 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 SAA2P0DJI9 122 aaPredicted RBP11.18□□□□□ -0.62
USP42-206ENST00000479544 TMEM144Q7Z5S9 345 aa11.18□□□□□ -0.62
USP42-206ENST00000479544 CX3CL1P78423 397 aa11.17□□□□□ -0.62
USP42-206ENST00000479544 MORN2Q502X0 79 aa11.17□□□□□ -0.62
USP42-206ENST00000479544 ZNF146Q15072 292 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms