RNA–Protein interactions for RNA: ENST00000476994.1

SREBF1-211, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-211	ENST00000476994	TNFSF18	Q9UNG2	199 aa		13.65	□□□□□ -0.22
SREBF1-211	ENST00000476994		F8W735	103 aa	Predicted RBP	13.64	□□□□□ -0.23
SREBF1-211	ENST00000476994	MT-CO2	P00403	227 aa		13.64	□□□□□ -0.23
SREBF1-211	ENST00000476994	C1QB	P02746	253 aa		13.64	□□□□□ -0.23
SREBF1-211	ENST00000476994	RAB11A	P62491	216 aa		13.64	□□□□□ -0.23
SREBF1-211	ENST00000476994	EWSR1	Q01844	656 aa	Known RBP eCLIP	13.64	□□□□□ -0.23	2e-7	■■■■□ 20.1
SREBF1-211	ENST00000476994	CD69	Q07108	199 aa		13.64	□□□□□ -0.23
SREBF1-211	ENST00000476994	EXOSC2	Q13868	293 aa	Known RBP	13.64	□□□□□ -0.23
SREBF1-211	ENST00000476994	OR4X2	Q8NGF9	303 aa		13.64	□□□□□ -0.23
SREBF1-211	ENST00000476994	AQP10	Q96PS8	301 aa		13.64	□□□□□ -0.23
SREBF1-211	ENST00000476994	FXYD6-FXYD2	A0A087WZ82	144 aa		13.63	□□□□□ -0.23
SREBF1-211	ENST00000476994	ADARB2-AS1	A8MUL3	147 aa		13.63	□□□□□ -0.23
SREBF1-211	ENST00000476994	CST7	O76096	145 aa		13.63	□□□□□ -0.23
SREBF1-211	ENST00000476994	IFNA4	P05014	189 aa		13.63	□□□□□ -0.23
SREBF1-211	ENST00000476994	SULT1A1	P50225	295 aa		13.63	□□□□□ -0.23
SREBF1-211	ENST00000476994	NHLH2	Q02577	135 aa		13.63	□□□□□ -0.23
SREBF1-211	ENST00000476994	C15orf32	Q32M92	178 aa		13.63	□□□□□ -0.23
SREBF1-211	ENST00000476994	VN1R17P	Q8TDU5	208 aa		13.63	□□□□□ -0.23
SREBF1-211	ENST00000476994	SCARB1	Q8WTV0	552 aa		13.63	□□□□□ -0.23
SREBF1-211	ENST00000476994	USMG5	Q96IX5	58 aa		13.63	□□□□□ -0.23
SREBF1-211	ENST00000476994	CCDC140	Q96MF4	163 aa		13.63	□□□□□ -0.23
SREBF1-211	ENST00000476994	HSPB11	Q9Y547	144 aa		13.63	□□□□□ -0.23
SREBF1-211	ENST00000476994	IGHV3-21	A0A0B4J1V1	117 aa		13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	HMSD	A8MTL9	139 aa		13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	CYB5B	O43169	146 aa		13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	RPL12	P30050	165 aa	Known RBP	13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	GPX4	P36969	197 aa	Predicted RBP	13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	OR8G2P	Q6IF36	304 aa		13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	ZNF546	Q86UE3	836 aa		13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	ZNF502	Q8TBZ5	544 aa		13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	MRAP	Q8TCY5	172 aa		13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	PINX1	Q96BK5	328 aa	Known RBP	13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	CITED2	Q99967	270 aa	Predicted RBP	13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	SLC25A31	Q9H0C2	315 aa		13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	GNB4	Q9HAV0	340 aa		13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	THYN1	Q9P016	225 aa		13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	PAIP2B	Q9ULR5	123 aa	Known RBP	13.62	□□□□□ -0.23
SREBF1-211	ENST00000476994	IGHV3-48	P01763	117 aa		13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994	FCGR2B	P31994	310 aa	Predicted RBP	13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994	OPRK1	P41145	380 aa		13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994	CDX1	P47902	265 aa	Predicted RBP	13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994	DLK1	P80370	383 aa		13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994	BAX	Q07812	192 aa		13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994	ZNF343	Q6P1L6	599 aa		13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994	C18orf65	Q6ZTR6	163 aa		13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994	ACOT7L	Q6ZUV0	252 aa		13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994	SLC16A13	Q7RTY0	426 aa		13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994	CACNG8	Q8WXS5	425 aa		13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994	UBE2E2	Q96LR5	201 aa		13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994		S4R3C0	116 aa		13.61	□□□□□ -0.23
SREBF1-211	ENST00000476994	PRB2	P02812	416 aa	Predicted RBP	13.6	□□□□□ -0.23
SREBF1-211	ENST00000476994	CD33	P20138	364 aa		13.6	□□□□□ -0.23
SREBF1-211	ENST00000476994	ATP5G2	Q06055	141 aa		13.6	□□□□□ -0.23
SREBF1-211	ENST00000476994	SLC38A11	Q08AI6	406 aa		13.6	□□□□□ -0.23
SREBF1-211	ENST00000476994	VWC2	Q2TAL6	325 aa		13.6	□□□□□ -0.23
SREBF1-211	ENST00000476994	OXLD1	Q5BKU9	147 aa		13.6	□□□□□ -0.23
SREBF1-211	ENST00000476994	STX12	Q86Y82	276 aa		13.6	□□□□□ -0.23
SREBF1-211	ENST00000476994	OR10P1	Q8NGE3	313 aa		13.6	□□□□□ -0.23
SREBF1-211	ENST00000476994	ZNF414	Q96IQ9	312 aa		13.6	□□□□□ -0.23
SREBF1-211	ENST00000476994	CXorf58	Q96LI9	332 aa		13.6	□□□□□ -0.23
SREBF1-211	ENST00000476994		A0A0G2JLM5	398 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	RPS10-NUDT3	A0A1W2PQS6	291 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	FNDC10	F2Z333	226 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994		I3L521	148 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	ARPC5	O15511	151 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	SCAF4	O95104	1147 aa	Known RBP	13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	IGHV3-11	P01762	117 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	IGHV3-23	P01764	117 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	CXCL2	P19875	107 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	RUNX1	Q01196	453 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	GAMT	Q14353	236 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	TMEM217	Q8N7C4	229 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	TMEM116	Q8NCL8	245 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	OR4X1	Q8NH49	305 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	GGACT	Q9BVM4	153 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	C21orf62	Q9NYP8	219 aa		13.59	□□□□□ -0.23
SREBF1-211	ENST00000476994	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	13.58	□□□□□ -0.24
SREBF1-211	ENST00000476994	TCRBV4S1A1T	A0A5B7	111 aa		13.58	□□□□□ -0.24
SREBF1-211	ENST00000476994	TRBV12-3	P01733	135 aa		13.58	□□□□□ -0.24
SREBF1-211	ENST00000476994	PF4	P02776	101 aa		13.58	□□□□□ -0.24
SREBF1-211	ENST00000476994	LGALS1	P09382	135 aa	Known RBP	13.58	□□□□□ -0.24
SREBF1-211	ENST00000476994	ZNF345	Q14585	488 aa		13.58	□□□□□ -0.24
SREBF1-211	ENST00000476994	ETFRF1	Q6IPR1	90 aa		13.58	□□□□□ -0.24
SREBF1-211	ENST00000476994	OR5C1	Q8NGR4	320 aa		13.58	□□□□□ -0.24
SREBF1-211	ENST00000476994	EEF1AKMT3	Q96AZ1	226 aa		13.58	□□□□□ -0.24
SREBF1-211	ENST00000476994	ATP6V0B	Q99437	205 aa		13.58	□□□□□ -0.24
SREBF1-211	ENST00000476994	WFDC1	Q9HC57	220 aa		13.58	□□□□□ -0.24
SREBF1-211	ENST00000476994	TSSC4	Q9Y5U2	329 aa	Predicted RBP	13.58	□□□□□ -0.24
SREBF1-211	ENST00000476994	IGKV1D-37	A0A075B6S9	117 aa		13.57	□□□□□ -0.24
SREBF1-211	ENST00000476994	IGKV1OR2-108	A0A075B7D4	117 aa		13.57	□□□□□ -0.24
SREBF1-211	ENST00000476994	TRBV7-1	A0A0A6YYK4	115 aa		13.57	□□□□□ -0.24
SREBF1-211	ENST00000476994		A0A1W2PRX2	142 aa		13.57	□□□□□ -0.24
SREBF1-211	ENST00000476994	PFDN1	O60925	122 aa		13.57	□□□□□ -0.24
SREBF1-211	ENST00000476994	S100A11	P31949	105 aa		13.57	□□□□□ -0.24
SREBF1-211	ENST00000476994	RND2	P52198	227 aa		13.57	□□□□□ -0.24
SREBF1-211	ENST00000476994	MFAP4	P55083	255 aa		13.57	□□□□□ -0.24
SREBF1-211	ENST00000476994	HBG1	P69891	147 aa		13.57	□□□□□ -0.24
SREBF1-211	ENST00000476994	HBG2	P69892	147 aa		13.57	□□□□□ -0.24
SREBF1-211	ENST00000476994	THAP8	Q8NA92	274 aa		13.57	□□□□□ -0.24
SREBF1-211	ENST00000476994	C4orf3	Q8WVX3	66 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms