RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 CTDSPLO15194 276 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 NUPL2O15504 423 aaKnown RBP10.44□□□□□ -0.74
UPF3A-204ENST00000475218 CDS2O95674 445 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 APOHP02749 345 aaPredicted RBP10.44□□□□□ -0.74
UPF3A-204ENST00000475218 OR5AC1P0C628 307 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 ERHP84090 104 aaKnown RBP10.44□□□□□ -0.74
UPF3A-204ENST00000475218 IFITM2Q01629 132 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 MLANAQ16655 118 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 BSXQ3C1V8 233 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 ZFP69Q49AA0 526 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 LILRB2Q8N423 598 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 SOSTQ9BQB4 213 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 RHPN1-AS1Q9BWJ2 59 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 TMEM222Q9H0R3 208 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 ZFAND3Q9H8U3 227 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 ALMS1Q8TCU4 4167 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 IGHV3OR16-13A0A075B7E8 117 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 IGHV3-74A0A0B4J1X5 117 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 MRPS10P82664 201 aaKnown RBP10.44□□□□□ -0.74
UPF3A-204ENST00000475218 EWSR1Q01844 656 aaKnown RBP eCLIP10.44□□□□□ -0.74
UPF3A-204ENST00000475218 RELQ04864 619 aaPredicted RBP10.44□□□□□ -0.74
UPF3A-204ENST00000475218 ZNF124Q15973 351 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 TOMM20LQ6UXN7 152 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 CCDC71LQ8N9Z2 235 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 SDHCQ99643 169 aaPredicted RBP10.44□□□□□ -0.74
UPF3A-204ENST00000475218 GPR132Q9UNW8 380 aa10.44□□□□□ -0.74
UPF3A-204ENST00000475218 A0A1B0GU03 582 aa10.43□□□□□ -0.74
UPF3A-204ENST00000475218 IFNA17P01571 189 aa10.43□□□□□ -0.74
UPF3A-204ENST00000475218 SLC35G3Q8N808 338 aa10.43□□□□□ -0.74
UPF3A-204ENST00000475218 TMEM116Q8NCL8 245 aa10.43□□□□□ -0.74
UPF3A-204ENST00000475218 TMEM230Q96A57 120 aa10.43□□□□□ -0.74
UPF3A-204ENST00000475218 NAA60Q9H7X0 242 aa10.43□□□□□ -0.74
UPF3A-204ENST00000475218 TBC1D24Q9ULP9 559 aa10.43□□□□□ -0.74
UPF3A-204ENST00000475218 TEX13DA0A0J9YY54 714 aaPredicted RBP10.42□□□□□ -0.74
UPF3A-204ENST00000475218 ANKRD20A5PA0PJZ0 165 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 GSTZ1O43708 216 aaPredicted RBP10.42□□□□□ -0.74
UPF3A-204ENST00000475218 GNG7O60262 68 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 YIF1AO95070 293 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 TMEM50AO95807 157 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 MEF2DQ14814 521 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 LAMTOR1Q6IAA8 161 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 APRG1Q8IVJ8 170 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 SELENOHQ8IZQ5 122 aaKnown RBP10.42□□□□□ -0.74
UPF3A-204ENST00000475218 DIRAS2Q96HU8 199 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 SRRQ9GZT4 340 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 V9GYH0 126 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 CRYM-AS1A6NIL9 109 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 AKAIN1P0CW23 69 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 IL18Q14116 193 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 SURF2Q15527 256 aaPredicted RBP10.42□□□□□ -0.74
UPF3A-204ENST00000475218 OR51S1Q8NGJ8 323 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 TMEM170AQ8WVE7 144 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 ST8SIA2Q92186 375 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 GPR146Q96CH1 333 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 VSIRQ9H7M9 311 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 PRR13Q9NZ81 148 aa10.42□□□□□ -0.74
UPF3A-204ENST00000475218 TRAV14DV4A0A0A6YYC5 116 aa10.41□□□□□ -0.74
UPF3A-204ENST00000475218 OR4C46A6NHA9 309 aa10.41□□□□□ -0.74
UPF3A-204ENST00000475218 B3GALNT1O75752 331 aa10.41□□□□□ -0.74
UPF3A-204ENST00000475218 IL7P13232 177 aa10.41□□□□□ -0.74
UPF3A-204ENST00000475218 SNCAP37840 140 aa10.41□□□□□ -0.74
UPF3A-204ENST00000475218 NRARPQ7Z6K4 114 aa10.41□□□□□ -0.74
UPF3A-204ENST00000475218 WFDC3Q8IUB2 231 aa10.41□□□□□ -0.74
UPF3A-204ENST00000475218 SLC7A5P1Q8MH63 180 aa10.41□□□□□ -0.74
UPF3A-204ENST00000475218 RBPMSQ93062 196 aaKnown RBP10.41□□□□□ -0.74
UPF3A-204ENST00000475218 RRNAD1Q96FB5 475 aaKnown RBP10.41□□□□□ -0.74
UPF3A-204ENST00000475218 ST6GAL2Q96JF0 529 aa10.41□□□□□ -0.74
UPF3A-204ENST00000475218 PUS1Q9Y606 427 aaKnown RBP eCLIP10.41□□□□□ -0.74
UPF3A-204ENST00000475218 ATG12O94817 140 aa10.4□□□□□ -0.74
UPF3A-204ENST00000475218 HOXA1P49639 335 aaPredicted RBP10.4□□□□□ -0.74
UPF3A-204ENST00000475218 DEFB135Q30KP9 77 aa10.4□□□□□ -0.74
UPF3A-204ENST00000475218 ZNF600Q6ZNG1 722 aa10.4□□□□□ -0.74
UPF3A-204ENST00000475218 Q6ZWC4 215 aa10.4□□□□□ -0.74
UPF3A-204ENST00000475218 TCTE3Q8IZS6 198 aa10.4□□□□□ -0.74
UPF3A-204ENST00000475218 DUSP18Q8NEJ0 188 aa10.4□□□□□ -0.74
UPF3A-204ENST00000475218 CACNG5Q9UF02 275 aa10.4□□□□□ -0.74
UPF3A-204ENST00000475218 C14orf166Q9Y224 244 aaKnown RBP10.4□□□□□ -0.74
UPF3A-204ENST00000475218 TMEM56-RWDD3S4R434 201 aa10.4□□□□□ -0.74
UPF3A-204ENST00000475218 IGKV3-7A0A075B6H7 116 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 IGHV3-66A0A0C4DH42 116 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 DISC1C4P0D8 188 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 IGKV1-17P01599 117 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 RPL35AP18077 110 aaKnown RBP10.39□□□□□ -0.75
UPF3A-204ENST00000475218 NPBWR1P48145 328 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 TFPI2P48307 235 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 SPCS3P61009 180 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 SUPT4H1P63272 117 aaKnown RBP10.39□□□□□ -0.75
UPF3A-204ENST00000475218 TMEM268Q5VZI3 342 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 MZT2BQ6NZ67 158 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 FAM219AQ8IW50 185 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 GBGT1Q8N5D6 347 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 FAM24BQ8N5W8 94 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 OR52E5Q8NH55 327 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 MAP6D1Q9H9H5 199 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 TP53TG1Q9Y2A0 90 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 KIR2DL5BA0A0G2JN68 375 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 KIR2DL5BA0A0G2JPC4 375 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 CLN5O75503 358 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 TMEM187Q14656 261 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 TCF24Q7RTU0 167 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 898.4 ms