RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 CA7P43166 264 aa1.35□□□□□ -2.19
VPS41-207ENST00000439468 MGAT3Q09327 533 aa1.35□□□□□ -2.19
VPS41-207ENST00000439468 GNA13Q14344 377 aa1.35□□□□□ -2.19
VPS41-207ENST00000439468 ZNF767PQ75MW2 155 aa1.35□□□□□ -2.19
VPS41-207ENST00000439468 LRRC34Q8IZ02 419 aa1.35□□□□□ -2.19
VPS41-207ENST00000439468 DAND5Q8N907 189 aa1.35□□□□□ -2.19
VPS41-207ENST00000439468 EEF1AKMT1Q8WVE0 214 aa1.35□□□□□ -2.19
VPS41-207ENST00000439468 NMNAT3Q96T66 252 aa1.35□□□□□ -2.19
VPS41-207ENST00000439468 MND1Q9BWT6 205 aa1.35□□□□□ -2.19
VPS41-207ENST00000439468 PLEKHJ1Q9NW61 149 aa1.35□□□□□ -2.19
VPS41-207ENST00000439468 EMC3Q9P0I2 261 aa1.35□□□□□ -2.19
VPS41-207ENST00000439468 ABCA4P78363 2273 aa1.35□□□□□ -2.19
VPS41-207ENST00000439468 NCKAP5O14513 1909 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 TMED7-TICAM2A0A0A6YYA0 188 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 OR5K4A6NMS3 321 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 UBFD1O14562 309 aaKnown RBP1.34□□□□□ -2.19
VPS41-207ENST00000439468 UBE2L6O14933 153 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 CETN3O15182 167 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 STX10O60499 249 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 REG1AP05451 166 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 COX5BP10606 129 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 HIST1H1CP16403 213 aaKnown RBP1.34□□□□□ -2.19
VPS41-207ENST00000439468 BLVRAP53004 296 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 TMEM33P57088 247 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 TAS2R45P59539 299 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 JOSD1Q15040 202 aaPredicted RBP1.34□□□□□ -2.19
VPS41-207ENST00000439468 SPATA12Q7Z6I5 190 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 NAA40Q86UY6 237 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 SLC35F6Q8N357 371 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 TMEM251Q8N6I4 163 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 CNEP1R1Q8N9A8 125 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 SMIM19Q96E16 107 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 DNAJC30Q96LL9 226 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 MBOAT7Q96N66 472 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 KLF6Q99612 283 aaPredicted RBP1.34□□□□□ -2.19
VPS41-207ENST00000439468 TMEM109Q9BVC6 243 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 TTTY13Q9BZ97 58 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 CXCL16Q9H2A7 254 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 PCYT1BQ9Y5K3 369 aaPredicted RBP1.34□□□□□ -2.19
VPS41-207ENST00000439468 MPDZO75970 2070 aa1.34□□□□□ -2.19
VPS41-207ENST00000439468 NCOA6Q14686 2063 aaPredicted RBP1.34□□□□□ -2.19
VPS41-207ENST00000439468 NYNRINQ9P2P1 1898 aaKnown RBP1.33□□□□□ -2.2
VPS41-207ENST00000439468 AKAP6Q13023 2319 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 TRAV8-1A0A0A6YYK1 113 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 H3BRN7 92 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 SLC17A3O00476 420 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 YEATS4O95619 227 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 TYMSP04818 313 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 GZMBP10144 247 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 PEBP1P30086 187 aaKnown RBP1.33□□□□□ -2.2
VPS41-207ENST00000439468 CTBP2P56545 445 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 CXCR4P61073 352 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 HLA-DRB3P79483 266 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 PPP1R1AQ13522 171 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 TPRXLQ17RH7 258 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.33□□□□□ -2.2
VPS41-207ENST00000439468 AMTNQ6UX39 209 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 GLT6D1Q7Z4J2 308 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 TMEM156Q8N614 296 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 TMBIM1Q969X1 311 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 KCTD7Q96MP8 289 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 MIEN1Q9BRT3 115 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 PSORS1C2Q9UIG4 136 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 PSMD13Q9UNM6 376 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 C15orf41Q9Y2V0 281 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 ATP6V1DQ9Y5K8 247 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 MYO18AQ92614 2054 aaKnown RBP1.33□□□□□ -2.2
VPS41-207ENST00000439468 KNL1Q8NG31 2342 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 MUC2Q02817 5179 aa1.33□□□□□ -2.2
VPS41-207ENST00000439468 MYH10P35580 1976 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 CNTRLQ7Z7A1 2325 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 H3BPC8 53 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 GNRH2O43555 120 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 HLA-DRAP01903 254 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 TPM3P06753 285 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 CD52P31358 61 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 TPM4P67936 248 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 FABP5Q01469 135 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 MLLT11Q13015 90 aaPredicted RBP1.32□□□□□ -2.2
VPS41-207ENST00000439468 AGTRAPQ6RW13 159 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 FAM9CQ8IZT9 166 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 DEFB119Q8N690 84 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 OR2D3Q8NGH3 330 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 OR4X1Q8NH49 305 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 SFRP2Q96HF1 295 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 DHRS9Q9BPW9 319 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 ZNF471Q9BX82 626 aaPredicted RBP1.32□□□□□ -2.2
VPS41-207ENST00000439468 DRC3Q9H069 523 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 AMMECR1Q9Y4X0 333 aaPredicted RBP1.32□□□□□ -2.2
VPS41-207ENST00000439468 RP1P56715 2156 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 POLEQ07864 2286 aa1.32□□□□□ -2.2
VPS41-207ENST00000439468 MYH6P13533 1939 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 IGHV3-15A0A0B4J1V0 119 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 A0A1B0GVG6 124 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 GRIFINA4D1Z8 144 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 LY6LH3BQJ8 138 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 IGHV1-69P01742 117 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 HLA-DQB2P05538 268 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 BPGMP07738 259 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 ZNF728P0DKX0 622 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms