RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 ZHX1-C8orf76Q96EF9 292 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 ERMAPQ96PL5 475 aaPredicted RBP2.03□□□□□ -2.08
USP40-204ENST00000427947 WDR61Q9GZS3 305 aaKnown RBP2.03□□□□□ -2.08
USP40-204ENST00000427947 ABCG5Q9H222 651 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 SS18L2Q9UHA2 77 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 MCTS1Q9ULC4 181 aaKnown RBP2.03□□□□□ -2.08
USP40-204ENST00000427947 UFC1Q9Y3C8 167 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 KMT2AQ03164 3969 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 CHD9Q3L8U1 2897 aa2.03□□□□□ -2.08
USP40-204ENST00000427947 KIAA1671Q9BY89 1806 aa2.03□□□□□ -2.09
USP40-204ENST00000427947 ADAMTSL1Q8N6G6 1762 aa2.03□□□□□ -2.09
USP40-204ENST00000427947 DIP2CQ9Y2E4 1556 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 APC2O95996 2303 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 EFCAB5A4FU69 1503 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 AGLP35573 1532 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 ARHGAP5Q13017 1502 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 MAP3K1Q13233 1512 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 KIAA0100Q14667 2235 aaKnown RBP2.02□□□□□ -2.09
USP40-204ENST00000427947 ZNF518AQ6AHZ1 1483 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 MBD5Q9P267 1494 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 SHANK1Q9Y566 2161 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 DISP2A7MBM2 1401 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 FGD6Q6ZV73 1430 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 IGKV2-24A0A0C4DH68 120 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 VPS37CA5D8V6 355 aaPredicted RBP2.02□□□□□ -2.09
USP40-204ENST00000427947 OR11H12B2RN74 326 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 C9JCJ5 164 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 G3V2T6 193 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 H3BQV1 296 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 C15orf65H3BRN8 121 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 SLC17A3O00476 420 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 TXNDC9O14530 226 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 IFNA21P01568 189 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 IGHV3-53P01767 116 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 SMIM17P0DL12 118 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 CPMP14384 443 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 SERPINB1P30740 379 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 S100A7P31151 101 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 GABRA2P47869 451 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 TCTAP57738 103 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 HBA1P69905 142 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 BAMBIQ13145 260 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 TSNQ15631 228 aaKnown RBP2.02□□□□□ -2.09
USP40-204ENST00000427947 NOXRED1Q6NXP6 359 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 Q6ZS49 121 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 GOLT1AQ6ZVE7 132 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 SPATA12Q7Z6I5 190 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 TAC4Q86UU9 113 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.02□□□□□ -2.09
USP40-204ENST00000427947 OR11H2Q8NH07 326 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 RNASE6Q93091 150 aaKnown RBP2.02□□□□□ -2.09
USP40-204ENST00000427947 MND1Q9BWT6 205 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 C11orf68Q9H3H3 251 aaKnown RBP2.02□□□□□ -2.09
USP40-204ENST00000427947 TAAR3PQ9P1P4 343 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 TMEM56-RWDD3S4R434 201 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 C3P01024 1663 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 ABCA6Q8N139 1617 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 SAMD9LQ8IVG5 1584 aa2.02□□□□□ -2.09
USP40-204ENST00000427947 FMN1Q68DA7 1419 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 CASKIN1Q8WXD9 1431 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 MIA2Q96PC5 1412 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 KIAA1107Q9UPP5 1409 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 ROCK1Q13464 1354 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 SCN4AP35499 1836 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 ICE1Q9Y2F5 2266 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 STRCP1A6NGW2 1772 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 KIDINS220Q9ULH0 1771 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 LRRIQ1Q96JM4 1722 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 IGKV1D-37A0A075B6S9 117 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 TRAV9-1A0A075B6T8 112 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 LY6HO94772 140 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 SOD1P00441 154 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 C8GP07360 202 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 SRP19P09132 144 aaKnown RBP2.01□□□□□ -2.09
USP40-204ENST00000427947 SULT1A3P0DMM9 295 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 SULT1A4P0DMN0 295 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 NPPCP23582 126 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 CRHBPP24387 322 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 CD200P41217 278 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 RPL27AP46776 148 aaKnown RBP2.01□□□□□ -2.09
USP40-204ENST00000427947 CSN1S1P47710 185 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 RHOBP62745 196 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 RHEBQ15382 184 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 CST6Q15828 149 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 ZNF322Q6U7Q0 402 aaPredicted RBP2.01□□□□□ -2.09
USP40-204ENST00000427947 TMEM136Q6ZRR5 245 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 SSX8Q7RTT4 187 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 STX19Q8N4C7 294 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 C3orf22Q8N5N4 141 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 FNDC9Q8TBE3 224 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 SLC25A40Q8TBP6 338 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 TSPAN32Q96QS1 320 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 GINS3Q9BRX5 216 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 TTTY13Q9BZ97 58 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 DUSP21Q9H596 190 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 BIN3Q9NQY0 253 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 MED29Q9NX70 200 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 FBXL12Q9NXK8 326 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 PYCARDQ9ULZ3 195 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 REREQ9P2R6 1566 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms