RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 TRAV14DV4A0A0A6YYC5 116 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 RPS10-NUDT3A0A1W2PQS6 291 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 PPP5D1E7EU14 171 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 LINC01619G3V211 115 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 MPC2O95563 127 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 PF4P02776 101 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 CLEC3BP05452 202 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 PVALBP20472 110 aaPredicted RBP9.31□□□□□ -0.92
LINC00539-202ENST00000423575 MYCNOSP40205 109 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 RAB11AP62491 216 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 CD69Q07108 199 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 ZNF616Q08AN1 781 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 ACSM6Q6P461 480 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 HAPLN4Q86UW8 402 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 UBAC2Q8NBM4 344 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 CHAC2Q8WUX2 184 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 RANGRFQ9HD47 186 aaPredicted RBP9.31□□□□□ -0.92
LINC00539-202ENST00000423575 ZC4H2Q9NQZ6 224 aa9.31□□□□□ -0.92
LINC00539-202ENST00000423575 IGSF23A1L1A6 192 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 FAM24AA6NFZ4 105 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 OR2T8A6NH00 312 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 PMS2P5A8MQ11 134 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 METTL15P1P0C7V9 234 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 HOXD3P31249 432 aaPredicted RBP9.3□□□□□ -0.92
LINC00539-202ENST00000423575 FCGR2BP31994 310 aaPredicted RBP9.3□□□□□ -0.92
LINC00539-202ENST00000423575 ARL3P36405 182 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 BCAP31P51572 246 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 CAV2P51636 162 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 RND2P52198 227 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 SLURP1P55000 103 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 MFAP4P55083 255 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 Q56UQ5 140 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 FAM209BQ5JX69 171 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 PRSS54Q6PEW0 395 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 LINC00482Q8N8I6 264 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 DPF1Q92782 380 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 ATP6V0BQ99437 205 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 RNF126Q9BV68 326 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 LYRM2Q9NU23 88 aaPredicted RBP9.3□□□□□ -0.92
LINC00539-202ENST00000423575 MBD2Q9UBB5 411 aa9.3□□□□□ -0.92
LINC00539-202ENST00000423575 hCG_2014768A0A024R1R8 64 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 E5RGE8 158 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 TGOLN2O43493 480 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 RLN2P04090 185 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 SLC25A4P12235 298 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 ADMP35318 185 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 RAP2BP61225 183 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 ARL16Q0P5N6 197 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 Q5BKY6 102 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 OR8G2PQ6IF36 304 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 ACOT7LQ6ZUV0 252 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 TMEM252Q8N6L7 170 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 OR4X1Q8NH49 305 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 ASB13Q8WXK3 278 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 BSCL2Q96G97 398 aaPredicted RBP9.29□□□□□ -0.92
LINC00539-202ENST00000423575 TXN2Q99757 166 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 CHRDL1Q9BU40 450 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 MGAM2Q2M2H8 2515 aa9.29□□□□□ -0.92
LINC00539-202ENST00000423575 A0A1B0GVG6 124 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 G3V3Q6 166 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 GNG7O60262 68 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 GGCTO75223 188 aaKnown RBP9.28□□□□□ -0.92
LINC00539-202ENST00000423575 CLN5O75503 358 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 CST7O76096 145 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 OR2C1O95371 312 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 CTSGP08311 255 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 PET100P0DJ07 73 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 ZP3P21754 424 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 GPX4P36969 197 aaPredicted RBP9.28□□□□□ -0.92
LINC00539-202ENST00000423575 NPBWR1P48145 328 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 GAMTQ14353 236 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 RPEL1Q2QD12 228 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 PRR31Q5SQ13 230 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 ETFRF1Q6IPR1 90 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 SPSB3Q6PJ21 355 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 TMEM116Q8NCL8 245 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 CACNG8Q8WXS5 425 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 NPIPB3Q92617 1050 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 DLX4Q92988 240 aaPredicted RBP9.28□□□□□ -0.92
LINC00539-202ENST00000423575 ACY3Q96HD9 319 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 ZNF414Q96IQ9 312 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 PKD1L1Q8TDX9 2849 aa9.28□□□□□ -0.92
LINC00539-202ENST00000423575 NOTCH3Q9UM47 2321 aa9.27□□□□□ -0.92
LINC00539-202ENST00000423575 IGHV3-35A0A0C4DH35 117 aa9.27□□□□□ -0.93
LINC00539-202ENST00000423575 IGKV1-17P01599 117 aa9.27□□□□□ -0.93
LINC00539-202ENST00000423575 IGLC1P0CG04 106 aa9.27□□□□□ -0.93
LINC00539-202ENST00000423575 LYL1P12980 280 aa9.27□□□□□ -0.93
LINC00539-202ENST00000423575 P2RY1P47900 373 aa9.27□□□□□ -0.93
LINC00539-202ENST00000423575 KLF5Q13887 457 aaPredicted RBP9.27□□□□□ -0.93
LINC00539-202ENST00000423575 OR10P1Q8NGE3 313 aa9.27□□□□□ -0.93
LINC00539-202ENST00000423575 OR2T35Q8NGX2 323 aa9.27□□□□□ -0.93
LINC00539-202ENST00000423575 DCUN1D4Q92564 292 aa9.27□□□□□ -0.93
LINC00539-202ENST00000423575 SLC35E1Q96K37 410 aa9.27□□□□□ -0.93
LINC00539-202ENST00000423575 GAR1Q9NY12 217 aaKnown RBP9.27□□□□□ -0.93
LINC00539-202ENST00000423575 SMLR1H3BR10 107 aa9.26□□□□□ -0.93
LINC00539-202ENST00000423575 NUPL2O15504 423 aaKnown RBP9.26□□□□□ -0.93
LINC00539-202ENST00000423575 OR10J1P30954 320 aa9.26□□□□□ -0.93
LINC00539-202ENST00000423575 SULT1A1P50225 295 aa9.26□□□□□ -0.93
LINC00539-202ENST00000423575 SYNJ2BPP57105 145 aa9.26□□□□□ -0.93
LINC00539-202ENST00000423575 DLK1P80370 383 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms