RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 SRP14P37108 136 aaKnown RBP2.73□□□□□ -1.97
VPS54-204ENST00000416400 LPAR6P43657 344 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 GABRA2P47869 451 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 DNASE1L1P49184 302 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 CDC34P49427 236 aaPredicted RBP2.73□□□□□ -1.97
VPS54-204ENST00000416400 TPPP2P59282 170 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 PPP1CAP62136 330 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 LCN6P62502 163 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 TNXAQ16473 311 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 PRSS8Q16651 343 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 TTC32Q5I0X7 151 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 TOMM20LQ6UXN7 152 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 TCF24Q7RTU0 167 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 SGPP2Q8IWX5 399 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 C20orf196Q8IYI0 205 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 ZCCHC24Q8N2G6 241 aaKnown RBP2.73□□□□□ -1.97
VPS54-204ENST00000416400 SLC25A29Q8N8R3 303 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 MORN4Q8NDC4 146 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 OR4B1Q8NGF8 309 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 OR51A2Q8NGJ7 313 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 RPS4Y2Q8TD47 263 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 RTN4IP1Q8WWV3 396 aaPredicted RBP2.73□□□□□ -1.97
VPS54-204ENST00000416400 ADTRPQ96IZ2 230 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 ZNF514Q96K75 400 aaPredicted RBP2.73□□□□□ -1.97
VPS54-204ENST00000416400 PGLYRP3Q96LB9 341 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 CIB3Q96Q77 187 aaPredicted RBP2.73□□□□□ -1.97
VPS54-204ENST00000416400 PDCD1LG2Q9BQ51 273 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 GINS3Q9BRX5 216 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 MAP1LC3BQ9GZQ8 125 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 BANF2Q9H503 90 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 OR2S2Q9NQN1 319 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 ZNF835Q9Y2P0 537 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 MRPS16Q9Y3D3 137 aaKnown RBP2.73□□□□□ -1.97
VPS54-204ENST00000416400 RBM7Q9Y580 266 aaKnown RBP2.73□□□□□ -1.97
VPS54-204ENST00000416400 OR51B4Q9Y5P0 310 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 SCN11AQ9UI33 1791 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 ANKRD12Q6UB98 2062 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 DDX60LQ5H9U9 1706 aaKnown RBP2.73□□□□□ -1.97
VPS54-204ENST00000416400 SCN7AQ01118 1682 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 TRAV1-1A0A0B4J248 108 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 TRAV40A0A0B4J280 105 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 TMEM212A6NML5 194 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 IQCF5A8MTL0 148 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 TRAPPC2LH3BP13 241 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 COCHO43405 550 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 REG1AP05451 166 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 OR10J4P0C629 311 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 GIMD1P0DJR0 217 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 OR13C7P0DN81 318 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 OR12D1P0DN82 309 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 IL3RAP26951 378 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 P2RY2P41231 377 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 CAPZBP47756 277 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 OR12D2P58182 307 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 GRB2P62993 217 aaKnown RBP2.72□□□□□ -1.97
VPS54-204ENST00000416400 ENDOGQ14249 297 aaKnown RBP2.72□□□□□ -1.97
VPS54-204ENST00000416400 PMCHL1Q16048 86 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 OCIAD2Q56VL3 154 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 UNQ9165/PRO28630Q6UXU0 137 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 GTF2H5Q6ZYL4 71 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 ZNF101Q8IZC7 436 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 OR2Z1Q8NG97 314 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 GPR32P1Q8NGA4 272 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 OR5D18Q8NGL1 313 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 OR4X1Q8NH49 305 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 GPR119Q8TDV5 335 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 Q8WTZ3 238 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 C2orf15Q8WU43 125 aaKnown RBP2.72□□□□□ -1.97
VPS54-204ENST00000416400 SKA2Q8WVK7 121 aaPredicted RBP2.72□□□□□ -1.97
VPS54-204ENST00000416400 C11orf40Q8WZ69 217 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 AQP3Q92482 292 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 PSMF1Q92530 271 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 SLAMF6Q96DU3 332 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 WDR34Q96EX3 536 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 REEP6Q96HR9 211 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 ABHD14BQ96IU4 210 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 DERL3Q96Q80 235 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 LYSMD1Q96S90 227 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 VAMP8Q9BV40 100 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 CHST6Q9GZX3 395 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 MRPL27Q9P0M9 148 aaKnown RBP2.72□□□□□ -1.97
VPS54-204ENST00000416400 NAT8Q9UHE5 227 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 ZNF230Q9UIE0 474 aaPredicted RBP2.72□□□□□ -1.97
VPS54-204ENST00000416400 RAB22AQ9UL26 194 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 MED31Q9Y3C7 131 aa2.72□□□□□ -1.97
VPS54-204ENST00000416400 KIAA1551Q9HCM1 1747 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 TRAV9-1A0A075B6T8 112 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 CXorf51AA0A1B0GTR3 108 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 OR6C6A6NF89 314 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 CEACAM18A8MTB9 384 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 CORTO00230 105 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 GEMIN2O14893 280 aaKnown RBP2.71□□□□□ -1.98
VPS54-204ENST00000416400 ENSAO43768 121 aaKnown RBP2.71□□□□□ -1.98
VPS54-204ENST00000416400 MT-CO2P00403 227 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 TYMSP04818 313 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 SRP19P09132 144 aaKnown RBP2.71□□□□□ -1.98
VPS54-204ENST00000416400 OR5G3P0C626 314 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 SMIM17P0DL12 118 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 CTSEP14091 401 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 AKR1C4P17516 323 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms