RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 K7EP13 123 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 ETV2O00321 342 aaPredicted RBP9.95□□□□□ -0.82
HMGB1-206ENST00000405805 ZNF324O75467 553 aaPredicted RBP9.95□□□□□ -0.82
HMGB1-206ENST00000405805 MT-ND6P03923 174 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 TEPPQ6URK8 271 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 TEX29Q8N6K0 151 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 OR8G5Q8NG78 346 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 COL25A1Q9BXS0 654 aaPredicted RBP9.95□□□□□ -0.82
HMGB1-206ENST00000405805 GNB4Q9HAV0 340 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 PROCRQ9UNN8 238 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 PLXNB1O43157 2135 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 KBTBD11-OT1A0A1B0GTJ5 212 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 SP9P0CG40 484 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 RPL13AP40429 203 aaKnown RBP9.94□□□□□ -0.82
HMGB1-206ENST00000405805 CCL8P80075 99 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 SRSF9Q13242 221 aaKnown RBP eCLIP9.94□□□□□ -0.82
HMGB1-206ENST00000405805 OCC1Q8TAD7 63 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 TRAV3A0A0B4J244 114 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 FAM231BA6NCW3 169 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 COX7A2P2O60397 106 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 HLA-DQA1P01909 254 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 SPINK8P0C7L1 97 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 SPATA31B1PQ5VZV4 182 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 SCGB1D4Q6XE38 83 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 OR10X1Q8NGY0 326 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 MBD3L1Q8WWY6 194 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 FBXL7Q9UJT9 491 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 SSUH2Q9Y2M2 353 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 TRGV10A0A0A0MS01 117 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 J3QR06 171 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 MAS1LP35410 378 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 CCL13Q99616 98 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 PKIBQ9C010 78 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 RNASE7Q9H1E1 156 aaKnown RBP9.94□□□□□ -0.82
HMGB1-206ENST00000405805 TCF19Q9Y242 345 aa9.94□□□□□ -0.82
HMGB1-206ENST00000405805 CXorf1O96002 111 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 OR9G9P0C7N8 305 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 NHP2Q9NX24 153 aaKnown RBP9.93□□□□□ -0.82
HMGB1-206ENST00000405805 A0A0G2JLM5 398 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 ASCL4Q6XD76 172 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 C5orf17Q8NAS9 161 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 CCL17Q92583 94 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 NPVFQ9HCQ7 196 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 LINC00473A8K010 186 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 IGFBP2P18065 325 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 RPL7P18124 248 aaKnown RBP9.93□□□□□ -0.82
HMGB1-206ENST00000405805 OR2V2Q96R30 315 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 SNCGO76070 127 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 IL18BPO95998 194 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 IBA57Q5T440 356 aaKnown RBP9.93□□□□□ -0.82
HMGB1-206ENST00000405805 ZNF497Q6ZNH5 498 aa9.93□□□□□ -0.82
HMGB1-206ENST00000405805 ZCCHC24Q8N2G6 241 aaKnown RBP9.93□□□□□ -0.82
HMGB1-206ENST00000405805 DYSFO75923 2080 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 C19orf67A6NJJ6 358 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 WFDC3Q8IUB2 231 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 SSBP4Q9BWG4 385 aaPredicted RBP9.92□□□□□ -0.82
HMGB1-206ENST00000405805 SCRT1Q9BWW7 348 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 REG1AP05451 166 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 COX19Q49B96 90 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 LINC00596Q86U02 117 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 ZNF114Q8NC26 417 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 C5orf30Q96GV9 206 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 DYNLRB1Q9NP97 96 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 TMEM131Q92545 1883 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 ACP1P24666 158 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 FOXL2NBQ6ZUU3 175 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 ADAMTS9Q9P2N4 1935 aa9.92□□□□□ -0.82
HMGB1-206ENST00000405805 CT45A6P0DMU7 189 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 CT45A5P0DMU8 189 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 CT45A7P0DMV0 189 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 ERHP84090 104 aaKnown RBP9.91□□□□□ -0.82
HMGB1-206ENST00000405805 ETDBQ3ZM63 59 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 CT45A1Q5HYN5 189 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 MIR17HGQ75NE6 70 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 CT45A3Q8NHU0 189 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 ITLN1Q8WWA0 313 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 A0A1B0GW64 132 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 FOXH1O75593 365 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 SLC25A5P05141 298 aaKnown RBP9.91□□□□□ -0.82
HMGB1-206ENST00000405805 PFN1P07737 140 aaKnown RBP9.91□□□□□ -0.82
HMGB1-206ENST00000405805 COL8A2P25067 703 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 MZT1Q08AG7 82 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 CENPWQ5EE01 88 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 FAM214BQ7L5A3 538 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 LINC01551Q86U37 167 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 SPSB4Q96A44 273 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 SARAFQ96BY9 339 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 FRYQ5TBA9 3013 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 IGHV2-70DA0A0C4DH43 119 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 IGHV1-2P23083 117 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 GCHFRP30047 84 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 RBPJQ06330 500 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 FOXF2Q12947 444 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 MLANAQ16655 118 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 MOB3BQ86TA1 216 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 HIST1H4GQ99525 98 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 NBEAQ8NFP9 2946 aa9.91□□□□□ -0.82
HMGB1-206ENST00000405805 C10orf142B7Z368 130 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 C21orf140B9A014 251 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 FTH1P19P0C7X4 201 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms